Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07151 ATGGATCCAAAAGGAGCTTTGTGTGCTAACAACTGGGCAAGGTCCTCTTCCTTAACCTCTCCTGGGAATGGATTACAGACAAATTTATCCTCAGAACCTCCCCCTTTCTATGGGGTCAGGATGGAAGCACCTTTCAAACAATTCAATCAATCCTCAACAGCTCAGTCTGTTCTTCCAGGTGAATCTAACAAAGATATGAAGATCCCTAATCAAGAAAATTGTCCACTGGGTGACTCATCACAAACCAGTAAACTCCAAGATTGGGATCCCAGTGTGATGTTGAATAACCTCTCCTTCCTGGAAGAAAAGATTCATCAGCTCCAGGGTCTAGTGCACTTAATTATTAATAAAAAGTGCCAACCTTTTGGACAACCTCATGAACTCGTGACTCAGGAACAGCAGCTCATTACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACAGCAGGTAGTCTTCTCCCTTCTGTTAGGCACACTCTTACAAACACAAGTCCATTGGTTGGACAGCTTGGCCAGCTTCGTGGGATTAACCTTCCTTTCGGGTCAGGCTCAACTAGTGGTATTCAGCCACAAAATAATAATGGAAATAAATTGTATGATCAGCCTATGCAGAGTGATCCACCTAATAATTGTGAAATGGAGCAAAACTACAATATGGAAGAGCAGGAACATAAAGATGAAGAAGATGTGGAGGAGGGAGAGAACCTTCCACCTGGTTCGTATGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCACCTCATACACATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGGGATGCAAATCTCCGAATGCACATGCGAGGCCACGGTGATGAATACAAAACACCAGCAGCTCTTGCAAAACCACATAAAGAAACTGGCTCTGAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATGCTGGCTGCAAGCGAAACAAGGATCACAAGAAATTTCAGCCTCTAAAGACCATTTTGTGTGTCAAAAACCACTACAAAAGAACACACTGTGACAAGAGCTACACTTGCAGCAGGTGCAACACCAAGAAGTTTTCAGTCATTGCAGATCTCAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGGACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCCCTTTTCCAAGGCCATACACCAGCGATTCCTTTGGATGACAACAAAGGACTCACCGAGCCACATGATCACTGTGACACCAAAGAAAACAACAGCAAGGTTGGAAGTATGAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAATTGCAGTTCAAAACATCATGGATGTGAAAGGTAACATTGATGATCCTATCAGTTATTTCTCATCGTTGAACTTTGATGGCTGTAACTTTGGTGGGTTCAATGAATTCTCCCAACCTCCATTTGAAGACTCAGAAGGTTCTTTCTCCTTTCTCATGTCAGGATCGTTTAATTATCCTCCTAAATCTGGTGGTGAATCATGTTCTGATAATCTGTAG 1536 0.4173 MDPKGALCANNWARSSSLTSPGNGLQTNLSSEPPPFYGVRMEAPFKQFNQSSTAQSVLPGESNKDMKIPNQENCPLGDSSQTSKLQDWDPSVMLNNLSFLEEKIHQLQGLVHLIINKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTSPLVGQLGQLRGINLPFGSGSTSGIQPQNNNGNKLYDQPMQSDPPNNCEMEQNYNMEEQEHKDEEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDNKGLTEPHDHCDTKENNSKVGSMNFCFGSNPSSEIAVQNIMDVKGNIDDPISYFSSLNFDGCNFGGFNEFSQPPFEDSEGSFSFLMSGSFNYPPKSGGESCSDNL. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07151 511 MobiDBLite consensus disorder prediction 13 33 - -
Seca8g07151 511 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 67 483 IPR044300 GO:0010044|GO:0010447
Seca8g07151 511 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Seca8g07151 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
Seca8g07151 511 SUPERFAMILY beta-beta-alpha zinc fingers 257 284 IPR036236 -
Seca8g07151 511 Gene3D Classic Zinc Finger 243 313 - -
Seca8g07151 511 SMART c2h2final6 259 281 IPR013087 -
Seca8g07151 511 SMART c2h2final6 308 341 IPR013087 -
Seca8g07151 511 SMART c2h2final6 346 368 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07151 Seca-Chr8 167739780 167742386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07151 227 509 C2H2 Transcription Factor Family AT1G34370 70.139 7.02e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g07151 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07151 - - gmx:100170687 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07151 8 167739780 167742386 Seca8g07151 8 167739780 167742386 ECH