Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07141 ATGGAAGATTCAGAGGAAGATGAGCTGCTGAATCTTAGCCTTTCAGTTGCTGCTGATAGAGAAAGGAAAAAAAAGGGAAAAAATGTTTCCATGAGTAGTAGTAGTAGTAATGCTAGGAAGTCTTCCTCCTATGAAGGCTATGAAGGGAAGATCTTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCACAGATCAAGGAAAGGAGTTGTTGAAGATGGAAATGGCCTTCCTTTAATCCATTTGTTACTCACAACTTCCACTTGTGTTGATGAGAACAACTTTGATTCTTCCTTAGAGAATCTCACTGATTTATACCAAACTGTTTCCCTAACAGGTGATTCAGTTCAACGTGTTGTTGCTTATTTTGCTGATGGTTTGGCTGCTAGGCTTCTCACCAAGAAATCCCCTTTCTATGACATGATCATGGAAGAACCAACCATTGAAGAAGAGTTTCTTGCTTTCACAGATCTCTACAGAGTCTCCCCTTACTTTCAATTTGCTCATTTCACTGCAAACCAAGCTATTTTGGAGGCTTTTGAGATGGAAGAAGAGAGGAACAACCGTTCTCTTCATGTCATTGACTTTGATGTCTCTTATGGCTTCCAATGGCCTTCTCTTATTCAATCTCTTTCAGAGAAAGCCACCACTGGGAACAGAATCTCCCTCAGAATAACAGGGTTTGGGAAGAGCCTTAAGGAGCTTCAAGAAACTGAATCTAGATTGGTTAGTTTCTCAAAGGGATTTGGAAATCTTGTGTTTGAATTTCAAGGTTTGTTAAGAGGCTCAAGGGTTATTAACTTAAGGAAGAAAAAGAATGAGACTGTGGCAGTTAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTTATGAAGATCTCTGACACATTGGGATTTGTTCATTCTCTTAATCCATCCATTGTTGTGTTGGTGGAGCAAGAAGGAAGTAGGAGTCCTAGAAGCTTCTTGTCAAGATTCACAGACTCTTTGCATTATTTTGCAGCCATGTTTGATTCATTGGATGATTGTCTACCACTTGAGAGCACTGAGAGGTTGAGAATTGAGAAGAAGCTTCTTGGGAAAGAGATAAAAAACATGCTTAATCATGATGTGGATGTGGATTGTCCTAAATATGAGAGGATGGAAACATGGAAAGCAAGGATGGAGAATCATGGGTTTGTTGGAACTAAAATAAGCTCAAAGTCTATAATACAAGCAAAACTGCTTCTCAAGATGAGGACTCATTATTGTCCACTTCAATTTGAAGAAGAAGGAGGTGGTGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTCCTTACAGTTTCAGCATGGCAACCAGTATGA 1383 0.3962 MEDSEEDELLNLSLSVAADRERKKKGKNVSMSSSSSNARKSSSYEGYEGKIFRLLQMREQMLRQDHRSRKGVVEDGNGLPLIHLLLTTSTCVDENNFDSSLENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTKKSPFYDMIMEEPTIEEEFLAFTDLYRVSPYFQFAHFTANQAILEAFEMEEERNNRSLHVIDFDVSYGFQWPSLIQSLSEKATTGNRISLRITGFGKSLKELQETESRLVSFSKGFGNLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVLVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKNMLNHDVDVDCPKYERMETWKARMENHGFVGTKISSKSIIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQPV. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07141 460 ProSiteProfiles GRAS family profile. 72 458 IPR005202 -
Seca8g07141 460 Pfam GRAS domain family 81 458 IPR005202 -
Seca8g07141 460 MobiDBLite consensus disorder prediction 20 42 - -
Seca8g07141 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 61 453 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07141 Seca-Chr8 167699319 167700701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07141 91 459 GRAS Transcription Factor Family AT3G54220 34.646 6.24e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca8g07141 GRAS 8.7e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07141 - - gmx:100813979 796.578