Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07128 ATGGAACACAAAGTGAAAACCACAACAATAACTCTAACTCCTCCTCCACCACCACCACTCCCAATTCATGTTCCCACCATGCTTTCTAACTCTCCTCCATCTTCATCTTCTTCTCCTCCTTCACAATCTCCAACACCTTTCCATTCACCCTCTCAACCACCATCTCCTCAACCACCACCAGTGGTGGTTAGCCCTTGTGCTGCCTGCAAGATCCTCCGCCGCAGGTGTGTGGAAAAATGTGTCTTGGCTCCCTATTTCCCTCCTACTGATCCACTCAAGTTCACCATTGCCCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGTAGAACTGCCAGAATCTCAGAGAGCAGATGCTGTGAGCAGCATGGTCTATGAAGCAAATGCTAGGATCAGAGACCCAGTTTATGGTTGTGCAGGTGCAATATGCCAACTCCAAAAGCAAGTTAGTGAGCTACAAGGACAGCTGGCCAAAGCACAAGCTGAGTTAGTCAACATGCAGTGCCAACAAGCTAATTTAGTGGCACTAATTTGCATGGAAATGAGTCAATCACAAGATCAGCACATGCTTCAGCCTCAACAACCTCATGTTGATATGAGCTGCTTCCTAGAGGATAACAGTAGTTTTGGCTCTGCTTGGGAGCCTCTTTGGACATGA 666 0.473 MEHKVKTTTITLTPPPPPPLPIHVPTMLSNSPPSSSSSPPSQSPTPFHSPSQPPSPQPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQVELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQGQLAKAQAELVNMQCQQANLVALICMEMSQSQDQHMLQPQQPHVDMSCFLEDNSSFGSAWEPLWT. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07128 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 64 192 - -
Seca8g07128 221 Pfam Lateral organ boundaries (LOB) domain 65 163 IPR004883 -
Seca8g07128 221 MobiDBLite consensus disorder prediction 1 59 - -
Seca8g07128 221 MobiDBLite consensus disorder prediction 11 26 - -
Seca8g07128 221 MobiDBLite consensus disorder prediction 37 59 - -
Seca8g07128 221 Coils Coil 145 172 - -
Seca8g07128 221 ProSiteProfiles LOB domain profile. 64 166 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07128 Seca-Chr8 167523096 167524826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07128 61 221 AS2 family AT1G07900 70.303 4.05e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g07128 LOB 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07128 - - gmx:100806667 314.309