Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07124 ATGGGGAGGAAAGGGAGTTGGTTTTCTTCCGTGAAGAAAGTTTTCATTTCTGATGCCAAAAAAGATCAGAAACAGAAACAATATAAGTCAAAGTTAACATGTTTTGGATATCATCATCATAATGAGGATCCTGAAGGAGCAGCAATTGCTGTTGTTCCCTCCCTTCCACCAAGAAAAGACATCAAACCAAAAACTGAGGCAGAGAATGAACAGAACAAACAAGCATTTTCATTGGTTTTAGCCACAGCTGTTGCAGCCGGGGCTGCAGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGCTCGTCTCACAAGTATGCCACATTACCCTGGAAAAACCAATGAAGAAATAGCAGCTATCAAGATTCAAAACGCATTCCGTGGATATTTGGCAAAGAGATCATTGCGTAGCTTGAGAAGTTTGGCAAGGTTGAAAACATTGGTACAAGGGCAATCTGTTCAACGGCAAGCAGCTACCACATTACAATGCATGCAAACTCTTTCAAGATTGCAGACTCAGGTTCGTGCCCGGAAGATTAGAGTGTCTGAGGAGAACCAATCTCTTCAGCGGCAACTGCAGCAGAAACGTGAAAAGGAACTTGAGAAGTCTCATTTGCAGCTGGTTGGAGAAAAATGGGATGATAGCTCAAAATCAAAGGAGCAAATTGAAGCAAAATTGTTGCACAAACAAGTAGCTGCTATGAGAAGAGAAAAGGCTTTGGCCTACGCTTCAACACATCAGCAAACGTGGAGGAACTCACCAAAATCTACAAATGCCACATTTATGGATCCAAACAATCCTCATTGGGGCTGGAATTGGCTTGAGAGATGGATGGCTGCAAGACCATGGGAGGGCCAAAACACTGTGTATCAAAATGACCATGCATCTGCAAAGAATGCTTCAAGCCACACCATGTCAGTTGGTGAAATCACCAAATTGTATTCTCTCCGTGATCAGAATGGTAAGAATTCACCAACAAGCCAAAAAGCTAGTCATCCTAGGAGTCACAATTCCCCTTCATTTCTATCTTCAAGGACCTCCCCATCTGCTAATAATGCAAAACCAAAGGCATCAAGTCCCAAGGGTAATTCCTCCTGGGGTGGTGATGGTGACTATAGAAACATATTAAGCAAAAACTCAGAAAGCAACCGCAGGCATAGCATTGCTGTCTCACCAGTAAGAGATGACGAAAGCCTTGCAAGCTCACCTGCTTTTACAAATCACACAACATCCACAAAGGTTGCAAAGGCAAGGTCTAAAGTGCAAAATGTACATAAAAATGGAACACTTGAAAAAGGAAGTGTTGTTTCTGCAAAGAAGAGGCTTTCTTGCCCAGCTTCTCCAGCCAGTCCAAGAAAGCATTCTATTCCAACAAGGGTGGGAATGGTTTCCAATAAGAATGTTGCCACCATCTCTGAAGGGAAAGTGAAGGTGAAGAATGGAGGGAGCAGGTAG 1452 0.4346 MGRKGSWFSSVKKVFISDAKKDQKQKQYKSKLTCFGYHHHNEDPEGAAIAVVPSLPPRKDIKPKTEAENEQNKQAFSLVLATAVAAGAAVAAAQAAAEVARLTSMPHYPGKTNEEIAAIKIQNAFRGYLAKRSLRSLRSLARLKTLVQGQSVQRQAATTLQCMQTLSRLQTQVRARKIRVSEENQSLQRQLQQKREKELEKSHLQLVGEKWDDSSKSKEQIEAKLLHKQVAAMRREKALAYASTHQQTWRNSPKSTNATFMDPNNPHWGWNWLERWMAARPWEGQNTVYQNDHASAKNASSHTMSVGEITKLYSLRDQNGKNSPTSQKASHPRSHNSPSFLSSRTSPSANNAKPKASSPKGNSSWGGDGDYRNILSKNSESNRRHSIAVSPVRDDESLASSPAFTNHTTSTKVAKARSKVQNVHKNGTLEKGSVVSAKKRLSCPASPASPRKHSIPTRVGMVSNKNVATISEGKVKVKNGGSR. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07124 483 SMART iq_5 113 135 IPR000048 GO:0005515
Seca8g07124 483 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Seca8g07124 483 Coils Coil 177 200 - -
Seca8g07124 483 MobiDBLite consensus disorder prediction 316 462 - -
Seca8g07124 483 MobiDBLite consensus disorder prediction 399 429 - -
Seca8g07124 483 Gene3D iswi atpase 111 150 - -
Seca8g07124 483 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Seca8g07124 483 PANTHER IQ-DOMAIN 5-RELATED 1 456 - -
Seca8g07124 483 MobiDBLite consensus disorder prediction 316 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07124 Seca-Chr8 167479295 167483377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07124 1 480 IQD Protein Family AT5G03040 44.399 1.64e-106 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07124 - - gmx:100807307 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07124 8 167479295 167483377 Seca8g07124 8 167479295 167483377 ECH