Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07092 ATGTTTATGGTTATGGATTCCACGGATAGGAGCCCAGAAAGGTGTTTAGATTCTCAACTGTGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACAAAAGTCTTCTACTTTCCTCAGGGTCACGCAGAGCACGCCCATGGGAAAGTAGATTTTGGCCAAACCAGGGTTCCACCTCTCATCCCTTGCAGGGTCTCTGCTATGAAATACATGGCAGACCCTGACACAGATGAGGTGTATGTGAAAATGAGGCTGATCCCTTTGAGAGAACATGAATTGGATTTGGAAGATGATTGTTTCTTGGGGAACAATGGATTGGAGGGTCAAGAAAAACCCACCTCTTTTGCCAAGACATTGACACAATCAGATGCTAACAATGGTGGAGGATTCTCTGTGCCTCGTTACTGTGCAGAGACAATCTTCCCAAGGTTGGATTATTCTGCAGAACCTCCAGTTCAGACCATCATTGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGGACACCTAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAGAAGAAGCTTGTTGCTGGGGATTCTATTGTGTTTCTGAGGGCAGAAAATGGTGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGAATTGGTGGTGGGCCTGAGTTTTCTTCTTCTTCTTGTTCTTGGAACCAGGTATCAGCCCCTATGTTTGGTGGGGGTTCTGGTTTCTTGTGTGGGAGTGAGAACAATTTGGTGAGTAGAAAAAGTGGTGATGAGTTTATTGGAAGAGTGACAGGTGAATCTGTTGTTGAGGCTGTAACTTGTGCTGTTAATGGCAGACCCTTTGAGGTTGTGTACTACCCAAGGGCTAGCACCCCAGAGTTTTGTGTTAAGGCCTCTGCTGTGAAGGCTTCAATGCAAATACAGTGGTGTTCAGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATTTCTTCTGTTCAAGTTGCAGATCCTATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAACCAGATTTACTTCAAAATGTCAAGTGTGTAAACCCTTGGTTGGTTGAACTAGTCTCCAACATGCCAACCTTCAATCTCTCTCCATTCTCACCTCCAAGGAAGAAACAACGGTTTATACAAGACCCATATTTTCACCTCATAAACCAACTTCCAATGCCACCACTCTCCAGCAATTTTCTCAGTTATACCAACTCTCTGTGTAACATCAAAGAGAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGACTAACTCCATCTGATTTTCCCTTCAACAAGCTGCAACCAGACATGCTTCTAGGTGGTTTTTCAAGGCTTGACCATGCAACTCAACCTGTTAGGCCTCCTTGTGGAACAACCTCCTATAATAAGAGCAGCACTAAGACCAATGTTGACATATCTTGCTTGTTGACTGTGGGAAATCCTGGCCAGAATTTTAAGGAATCCAATGAAGCAAAAACACCCCACATTTTGTTATTTGGAAAACTCATTCATACTGAGCAGAAGAGTTCAAACAGTTGCTCTGCTAGTACCACAGGGAATAATAGTGTGTCTGAAGGTACTTCCTTGAAGACATCAAATGATTCTTCTCATGACTTGGGTTTTGCTTTGCATCAAAATAGTCCAATTGAGAACTCTTCTGATGGAGGCTCTCCCTGGTACAAGGATCAACACAAGTCTGATCTTGGAGCTGAAAATGTTAGCACATTATGTATGGCTTTATAA 1836 0.4423 MFMVMDSTDRSPERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRVPPLIPCRVSAMKYMADPDTDEVYVKMRLIPLREHELDLEDDCFLGNNGLEGQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEFSSSSCSWNQVSAPMFGGGSGFLCGSENNLVSRKSGDEFIGRVTGESVVEAVTCAVNGRPFEVVYYPRASTPEFCVKASAVKASMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSPFSPPRKKQRFIQDPYFHLINQLPMPPLSSNFLSYTNSLCNIKENSSAGIQGARHAQIGLTPSDFPFNKLQPDMLLGGFSRLDHATQPVRPPCGTTSYNKSSTKTNVDISCLLTVGNPGQNFKESNEAKTPHILLFGKLIHTEQKSSNSCSASTTGNNSVSEGTSLKTSNDSSHDLGFALHQNSPIENSSDGGSPWYKDQHKSDLGAENVSTLCMAL. 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07092 611 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Seca8g07092 611 MobiDBLite consensus disorder prediction 541 590 - -
Seca8g07092 611 Gene3D - 316 390 - -
Seca8g07092 611 CDD B3_DNA 117 218 IPR003340 GO:0003677
Seca8g07092 611 SUPERFAMILY DNA-binding pseudobarrel domain 112 219 IPR015300 -
Seca8g07092 611 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca8g07092 611 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 567 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca8g07092 611 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Seca8g07092 611 SMART B3_2 118 220 IPR003340 GO:0003677
Seca8g07092 611 Gene3D - 116 220 IPR015300 -
Seca8g07092 611 MobiDBLite consensus disorder prediction 541 596 - -
Seca8g07092 611 FunFam Auxin response factor 116 220 - -
Seca8g07092 611 FunFam Auxin response factor 317 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07092 Seca-Chr8 166958421 166961890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07092 1 597 B3 DNA Binding Superfamily AT4G30080 56.271 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca8g07092 B3 2.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07092 - - ccaj:109810654 1049.65