Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07081 ATGGAGATTTCCAAGGAAAATTGCATCAATGGCAATGGCTCCTTGAAACTTTGCATCAATGGTGGTAACAATAATACCTCTGACCCTTTGAATTGGGGCATGGCTGCGGATGCATTGAAAGGCAGCCACCTTGATGAGGTGAAGCACATGGTGGAGGAGTACCGGAAACCGGTTGTGATGTTAGGTGGAAAGAGCCTCACCATAGCTCAAGTGGCAGCGGTTGCAACCCACTCAACCGGTGTGGCGGTGGAACTCTCCAAGGAGGCACACCCTGCCGTGAAAGCTAGCAGTGATTGGGTCATTGATAGTATGAACAAAGGCACTGATAGCTATGGAGTCACCACCGGATTCGGTGCAACCTCACACAGGAGAACAAAACAAGGTGGTGCTCTTCAAAACGAGCTCATAAGATTTTTGAATGCTGGCATTTTTGGCAATGGCACAGAATCATGTCACACCTTGCCTCACTCAGCTACAAGGGCAGCCATGCTGGTTAGGATCAACACCTTGCTCCAAGGATATTCAGGGATTAGATTTGAAATCATGGAAGCCATAGCCAAGTTTCTGAACCATAACATAACCCCATGCCTCCCTCTAAGAGGCACAATCACTGCATCAGGTGACTTGGTTCCTCTGTCATATGTTGCTGGCCTTTTGATTGGTAGGCCAAATTCCAAGTCTATTGGACCCAATGGAAAAGTCCTCAATGCTAAAGAGGCCTTTCAAGTAGCTGGAATTGAAAGTGGTTTCTTTGAGTTGCAACCTAAAGAAGGTTTGGCACTAGTGAATGGCACTGCAGTTGGATCTGGCTTGGCTTCCTTGGTTCTTTTTGAAGCAAACATACTTGCTATCCTCTCTGAAGTCTTGTCTGCAATTTTTGCTGAGGTTATGCAAGGAAAACCAGAATTCACTGACCATTTAACTCATAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCAGCTATAATGGAACATATTTTAGATGGAAGCTCTTATGTTAAGGCTGCACAAAAGGTACATGAGATTGATCCACTTCAGAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGTCCACAGATTGAAGTAATCAGGCATGCAACAAAGATGATTGAGAGGGAGATAAACTCTGTCAATGACAACCCATTGATTGATGTCTCAAGGAATAAGGCACTTCATGGAGGAAATTTCCAGGGTACCCCAATTGGTGTTTCAATGGATAACACACGTTTAGCTATTGCTTCAATTGGGAAGCTCATATTTGCTCAATTCTCTGAGCTTGTTAATGACTTCTACAACAATGGATTGCCTTCAAATCTAACAGCTAGCCGCAACCCAAGTTTGGATTATGGCTTCAAAGGAGCTGAAATTGCAATGGCATCCTATTGCTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTCCAGAGTGCTGAGCAACATAACCAGGATGTGAACTCTTTAGGCTTGATTTCCTCAAGAAAAACAGCTGAAGCAATTGACATATTGAAGCTCATGTCCTCTACTTTCATAGTAGCATTGTGCCAAGCCATTGATCTGAGGCATTTGGAGGAAAACTTGAAGAGTGCTGTTAAGAATACTGTGAGTCAAGTGGCTAAGAGGGTTCTCACAGTTGGTGTCAATGGTGAGTTGCATCCATCCAGGTTCTGTGAGAAGGACTTGCTCAAAGTTGTTGACCGTGAGTATGTCTTTGCTTATGTTGATGAACCCTGCAGTGCAACCTATCCTCTAATGCAAAAGCTGAGACATGTCCTAGTTGATCATGCATTGCAAAATGGTGATAAGGAGGCAAATGCAAGTACCTCAATTTTCCAAAAGATAGGAGCTTTTGAGGAAGAACTCAAGGCCCTTTTGCCTAAAGAGGTGGAAAGTGCTAGGATTGAAGTTGAGAATGGAAACCCTGTTGTTCCTAACAGAATTAAGGAATGCAGGTCTTATCCATTATACAAGTTTGTGAGAGAAAATTTGGGTACAACTTTGCTGACAGGTGAGAAAGTGAAGTCACCTGGTGAAGAGTGTGATAAGGTGTTCTCTGCATTGTGTGAAGGGAGGCTTATTGACCCCTTGTTGGACTGTCTAAAGGAGTGGAATGGTGCTCCTCTACCCATATGCTAG 2160 0.4389 MEISKENCINGNGSLKLCINGGNNNTSDPLNWGMAADALKGSHLDEVKHMVEEYRKPVVMLGGKSLTIAQVAAVATHSTGVAVELSKEAHPAVKASSDWVIDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGKVLNAKEAFQVAGIESGFFELQPKEGLALVNGTAVGSGLASLVLFEANILAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKVHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFIVALCQAIDLRHLEENLKSAVKNTVSQVAKRVLTVGVNGELHPSRFCEKDLLKVVDREYVFAYVDEPCSATYPLMQKLRHVLVDHALQNGDKEANASTSIFQKIGAFEEELKALLPKEVESARIEVENGNPVVPNRIKECRSYPLYKFVRENLGTTLLTGEKVKSPGEECDKVFSALCEGRLIDPLLDCLKEWNGAPLPIC. 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07081 719 Gene3D Fumarase/aspartase (Central domain) 266 714 - -
Seca8g07081 719 Gene3D - 19 265 IPR024083 -
Seca8g07081 719 NCBIfam phenylalanine ammonia-lyase 28 709 IPR005922 GO:0005737|GO:0006559|GO:0016841
Seca8g07081 719 FunFam Phenylalanine ammonia-lyase 20 265 - -
Seca8g07081 719 Pfam Aromatic amino acid lyase 66 543 IPR001106 -
Seca8g07081 719 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 201 217 IPR022313 GO:0016841
Seca8g07081 719 CDD PAL-HAL 64 529 IPR001106 -
Seca8g07081 719 Gene3D - 532 653 IPR023144 -
Seca8g07081 719 FunFam Phenylalanine ammonia-lyase 532 653 - -
Seca8g07081 719 PANTHER HISTIDINE AMMONIA-LYASE 24 719 IPR001106 -
Seca8g07081 719 SUPERFAMILY L-aspartase-like 28 719 IPR008948 GO:0003824
Seca8g07081 719 FunFam Phenylalanine ammonia-lyase 266 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07081 Seca-Chr8 166742318 166747727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07081 27 719 Monolignol Biosynthesis Gene Families AT3G53260 83.405 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07081 K10775 - gmx:100818777 1301.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07081 8 166742318 166747727 Seca8g07081 8 166742318 166747727 ECH