Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07079 ATGGGTAATGTTGAAATCCCCAATTGGCTTGAAGGGTTGCCACTGGCACCGGAATTTCACCCTACTGATACTGAATTTGCCGACCCGATTGCTTATATTTCAAAGATTGAAAAGGAAGCAGGGAACTTTGGGATATGTAAAATTATCCCACCGTTACCCAAACCTTCAAAAAAATATGTCTTTCATAATTTGAATAGGTCCCTCTTGAAGTGCCCTGAATTGGGTCCAGATAACAGTCCCTTGGCTGTTTCTAATTCTTCAAAAATGGGGGCCGGGGATAGTGGTAGTGATGGGGTGTTGCGAGCTGTGTTTACCACAAGGCATCAAGAACTGGGACAGAGTGTGAAAAAAACCAAAGGGACAGTTCAGAATCCACTGTCAGTTGTACATAAGCAAGTATGGCAGAGTGGGGAGGTCTATACCCTGGAACAGTTTGAGTCCAAATCGAAGTCTTTTGCGAGAAGCGTGCTAGGTATGGTGAAGGATGTTTCTCCACTTGTTATAGAGGCTATGTTTTGGAAGGCAGCTTTAGAGAAGCCTATATATTTGGAGTATGCCAATGATGTGCCTGGGTCAGCTTTTGGAGAATCCAAGGGTCAATTTTATTATAGTCATAGAAGGCGAAGAAAAAGGACTTATTATAAGAGTAGACTAGATAGCTCTGATTGTAAACAAAATGAAATGGGTAGCATAAGAGATACCCAAATTGATGAGACTAAGGGTGCTTCTGCCCAAAGTCCTGCAGACATGTGTTTACAGATGTCCAAGTCAGCCACAACTGTCTCAACATCTTCATCAAATGAAGCTTCACAGTCTTCCAAGGAAAAGAATTCAGATGCCAACAGTGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAATTTGCAAGTTATTGCACGCTCATCTGGGTCACTAACACGTTTCATGCCGGATGATATTCCTGGTGTTACTTCACCCATGGTATACATCGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAACTTCACAGCTTGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCCTTGCTTTTGAGGAAGTCATCCGCTCTAAGGGTTATGGTGGTAATATTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACGACACTTTTGACACCTGAAGTAGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAATACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCAGCTAACTTTGGGACTCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTCCGTAGAGCTGCAATGAATTATCTTCCAATGCTTTCCCATCAGCAACTGCTTTACCTGCTGACCATGTCTTTTATTTCAAGAGTACCAAGAACACTATTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAGTTTTTAGTAAAACAGGCCTTTATAGAAGATATGCTGCAAGAAAACAAACTGCTATCCATTCTTCTTGGAAAGGAAGCAACTAAACAAGCTGTTTTATGGAATGCTGATTTACTACCTGATTCCAGCAAAGATAATCAGCTTCCTGATTTAGCTTCTACTACTGGAACCTATATGGCCGACATGTCCAATATTAGTTCAGCAGATAAGGGTAGTAATTATCTGCTTGATGAGATGAGTTTGTATATGGAGAATCTGAATGATTTATATTTTGGTTGTGATGATCTTCCATATCACTTCCAAACTGATTCAGGAGCACTGACTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGGCTGTGATACAACCAACTGAGAAATTGATAACGGAACTTTTTCCTGATAATCGTCATCTAGTTCAAGATTCCTCTCTAAACTCTACTGCCGCCCTTCATAGCTCAGTCTCAAGTAGGGATCTTTCTGTTTCTGAGCTTTCTTCAGCAAATGATTCACCAGATCAATCATTAATCAAGTGCAATAAATGTTGGAACACCTCCAGTAAATTTTTTAGGCCACGGATTTTCTGCCTGGAGCATGCTGTTCAGATAGTGGATATGTTGCAGTGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAGGGGAGTTGCAGAAGAAATACATAGTGCTTTTGACTATAATGATGTTCCATTAGATATTGCATCCCCAGAAAGTTTGGCTCTGATAGATCTTGCAATTGATGGTGAAGAACATGGTGAATGTGAAGACTGGACATCTAAACTTGGCATTAACCTACGATATTGTGTCAATGCTAGAAATAACTCTCCATCTAAACAAGTTCCTTGGACACTAGCATTAGGGATGCTGTTCTATGATAAATCTCCTGGGTCAGAACTTTTATCTTTAAATTGGCAGTCGCAGAGAAGTCGGTCCAGAAGGTCAAAAGGTTTGGCTCAGACTAAACCTTCTGACATGAGAAAGAAGGATGATCAATTAGAGAGAAGAATAGATTGCTCCAATGCTGGAAAGAAGCTTATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGTTCCTCTGTAGCAAGCATGGTCCATGAATTCCAAGAGAAGTCCAAAAATGCATCAGCTGTCTTGAGTGGGGATCATTATAATTGTGTTTCTAAAGATAAGCTTGACACAGAGAATTTCAGGAGTGATTGTGGATTGTCATGTGTCTCTGCTTCCACTGCAATGTCCCCAATGCACACTGAAATCCAGATTGCTGAAGTGCCTACTAGTATGGGATTGAATACTGCTACATCACAACTTTCAAATTCCTGTCCTAATCATATTTTAATGAATGAAAAAGTTGGGGCAGAGATTGAGAATAAAACCATGCTGGAAATAAATATAGATGGAAAAAGTGACTCAACACTTGGTCATTCTAAGATGCATCACAATACCAGTGACTCAGAAATATGTGGCAAGGAGAGCCAGGATTGTCAGGAGAAGAAATGTTCTAGCTTACTTACAAATGCAACTGACAGAAATATTGATATGTTCAGAAAGGAACAAATTACAGAAGCAATTGTCATGGATAGCAAGTGTAATAGCTTAGATTTGGTTGATGAAGGACATAAGGAATATCAGTCTACATGCAAAAGCAACAGGGAACCTGTGTTATCTACTGCTTCATTGGTAAAACAGCCTACTCTTGCCTCTATGGATGGAGGTTTTGAAAGTCCAAATAATAATTATGCTGCAGAAAGAGTTAGCAATGCTATGTTTTTAAAAGAGACAATTGAGGAAGAAATCAATTCTTTGAGTGAAAGGGGCAAGAAACCTCTAAGTGATGGTAAACCAATAAGTGAACATACTCCAAATGGAGAAGTTTGTGAAGTTCCAAGAGAGCTTTATGCTGCTACAGACTTCCATAATAGAGTAATCTTGGATGCTGAGGTGCAGCAAGAAACTCAGGTTGGGAAAAGTAACGAAAAAGAAATAAATGAATCCACTCATGTCTCAGGAGAACGATCATGTGAATTTACAAGAGGGGAATATGGTGAAGGGTTGAATGATGAAGTAGTTTCAAAGTCTGCAAAGCAGTGTCAGATCCAAATTAAGAATAGAATTAATGAGGAATACGCTTCTAGTTATGTTGCAAAAGGTGATAATAGACGTGTAACTATATCAGAGTTAGGATGTTCTGAAGGTTCAGTGGAAACCTGTCCTAAAGAAGACTCCTGTATTCAATTAATTTCTGATAGAGAAAAGGAAATGGAAATCCAGCCAATTAATAGAATTGATGAGGAACTTTGCTCTGGTACTGAGACATTCTTAAAGGATTCTTCTGTATCGATACAGGAACGCTCTCAAATTGAGAAAAAGACGTGTGGTAGAGAAAACAAAAATGAAAGTGAAGTTCATTTGTTACAAGATAACAGGGAGCTGGAAAACTGTGAGTTGACTACAGCAGTTCCCAGGCCAAATGCTGGGAAGAGAATAAAGAGGAAAGTGGAAGAGACAACAGACAACCAATTCGAATGCAACAGCTTTATTAGAGGTCCATGTGAGGGACTGAGGCCAAGAGCTGGGAAGATTGCCACAGGCAAAAATGGGGAGGACATCAGCCAAAATGACATGGAAGATTCGGTTGCCAAACGAGCACGGAAACCTTCTGAAGCTTCGGTTCCTCGCAAGAATAAAAAAGATGATGTTATAAAGCCCCACAGGTGTGACCTTGATGGTTGCCGTATGAGTTTCATGACTAAGACTGAGTTATCTATGCACAAACGAAACCTTTGCCCACATAAAGGGTGTGGTAAGAAGTTCAGTTCTCACAAATATGCTATGCTTCACGAGCGCGTTCATGATGATGAGAGGCCCCTTAAATGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCATGGGCAAGGACAGAGCATATACGGGTGCATACTGGGGAGAAGCCTTATCAATGCAAGGTCGAGGGATGTTGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCATAGACGGAAAACAGGGCACTATGTGAAATCTTCAGCTTGA 4635 0.4067 MGNVEIPNWLEGLPLAPEFHPTDTEFADPIAYISKIEKEAGNFGICKIIPPLPKPSKKYVFHNLNRSLLKCPELGPDNSPLAVSNSSKMGAGDSGSDGVLRAVFTTRHQELGQSVKKTKGTVQNPLSVVHKQVWQSGEVYTLEQFESKSKSFARSVLGMVKDVSPLVIEAMFWKAALEKPIYLEYANDVPGSAFGESKGQFYYSHRRRRKRTYYKSRLDSSDCKQNEMGSIRDTQIDETKGASAQSPADMCLQMSKSATTVSTSSSNEASQSSKEKNSDANSDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYAVPGDYALAFEEVIRSKGYGGNIDHLAALKLLGEKTTLLTPEVVVASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLGKEATKQAVLWNADLLPDSSKDNQLPDLASTTGTYMADMSNISSADKGSNYLLDEMSLYMENLNDLYFGCDDLPYHFQTDSGALTCVGCGILGFPFMAVIQPTEKLITELFPDNRHLVQDSSLNSTAALHSSVSSRDLSVSELSSANDSPDQSLIKCNKCWNTSSKFFRPRIFCLEHAVQIVDMLQCKGGANVLIICHSDYQKIKAHARGVAEEIHSAFDYNDVPLDIASPESLALIDLAIDGEEHGECEDWTSKLGINLRYCVNARNNSPSKQVPWTLALGMLFYDKSPGSELLSLNWQSQRSRSRRSKGLAQTKPSDMRKKDDQLERRIDCSNAGKKLIQYSRRKFKSKQSCSSVASMVHEFQEKSKNASAVLSGDHYNCVSKDKLDTENFRSDCGLSCVSASTAMSPMHTEIQIAEVPTSMGLNTATSQLSNSCPNHILMNEKVGAEIENKTMLEINIDGKSDSTLGHSKMHHNTSDSEICGKESQDCQEKKCSSLLTNATDRNIDMFRKEQITEAIVMDSKCNSLDLVDEGHKEYQSTCKSNREPVLSTASLVKQPTLASMDGGFESPNNNYAAERVSNAMFLKETIEEEINSLSERGKKPLSDGKPISEHTPNGEVCEVPRELYAATDFHNRVILDAEVQQETQVGKSNEKEINESTHVSGERSCEFTRGEYGEGLNDEVVSKSAKQCQIQIKNRINEEYASSYVAKGDNRRVTISELGCSEGSVETCPKEDSCIQLISDREKEMEIQPINRIDEELCSGTETFLKDSSVSIQERSQIEKKTCGRENKNESEVHLLQDNRELENCELTTAVPRPNAGKRIKRKVEETTDNQFECNSFIRGPCEGLRPRAGKIATGKNGEDISQNDMEDSVAKRARKPSEASVPRKNKKDDVIKPHRCDLDGCRMSFMTKTELSMHKRNLCPHKGCGKKFSSHKYAMLHERVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYQCKVEGCCLSFRFVSDFSRHRRKTGHYVKSSA. 1545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07079 1544 ProSitePatterns Zinc finger C2H2 type domain signature. 1454 1476 IPR013087 -
Seca8g07079 1544 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1478 - -
Seca8g07079 1544 Gene3D Cupin 9 464 - -
Seca8g07079 1544 Pfam jmjN domain 17 50 IPR003349 -
Seca8g07079 1544 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Seca8g07079 1544 MobiDBLite consensus disorder prediction 216 291 - -
Seca8g07079 1544 SUPERFAMILY Clavaminate synthase-like 292 457 - -
Seca8g07079 1544 ProSitePatterns Zinc finger C2H2 type domain signature. 1484 1506 IPR013087 -
Seca8g07079 1544 MobiDBLite consensus disorder prediction 1395 1422 - -
Seca8g07079 1544 Gene3D Classic Zinc Finger 1450 1536 - -
Seca8g07079 1544 FunFam Probable lysine-specific demethylase ELF6 1479 1508 - -
Seca8g07079 1544 ProSiteProfiles Zinc finger C2H2 type domain profile. 1452 1481 IPR013087 -
Seca8g07079 1544 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
Seca8g07079 1544 SUPERFAMILY beta-beta-alpha zinc fingers 1470 1510 IPR036236 -
Seca8g07079 1544 SUPERFAMILY beta-beta-alpha zinc fingers 1500 1534 IPR036236 -
Seca8g07079 1544 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Seca8g07079 1544 SMART c2h2final6 1429 1451 IPR013087 -
Seca8g07079 1544 SMART c2h2final6 1482 1506 IPR013087 -
Seca8g07079 1544 SMART c2h2final6 1452 1476 IPR013087 -
Seca8g07079 1544 SMART c2h2final6 1512 1538 IPR013087 -
Seca8g07079 1544 MobiDBLite consensus disorder prediction 1177 1196 - -
Seca8g07079 1544 ProSitePatterns Zinc finger C2H2 type domain signature. 1514 1538 IPR013087 -
Seca8g07079 1544 SMART JmjN_1 15 55 IPR003349 -
Seca8g07079 1544 SMART cupin_9 291 460 IPR003347 -
Seca8g07079 1544 MobiDBLite consensus disorder prediction 828 854 - -
Seca8g07079 1544 ProSiteProfiles Zinc finger C2H2 type domain profile. 1482 1511 IPR013087 -
Seca8g07079 1544 MobiDBLite consensus disorder prediction 1387 1422 - -
Seca8g07079 1544 MobiDBLite consensus disorder prediction 1128 1148 - -
Seca8g07079 1544 MobiDBLite consensus disorder prediction 1182 1196 - -
Seca8g07079 1544 MobiDBLite consensus disorder prediction 223 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07079 Seca-Chr8 166700767 166718632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07079 1 920 C2H2 Transcription Factor Family AT5G04240 55.005 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca8g07079 JmjC 3.2e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07079 - - gmx:100799861 2325.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07079 8 166700767 166718632 Seca8g07079 8 166700767 166718632 ECH