Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07071 ATGAATAACTCTGTTTCAGATAACAGTTTTATTATTGAGAGTGATGAAGAAGATGAGGAGAAGGATTTGAACAAAGGTGAAGTTGATGGTAACGATTCTGATTCTTCCAATTACTCAAATGAAAACCCGCCACAGAGGAAACCCAGTTCTTACAACATCTCATGGCCACAGAGTTACAGGCAATCTATTGATCTATACAGTAGTGTCCCATCACCAAATATTGGATTTCTGGGCACTCCCTCATTGTCAAGATTAAGCAGTTCTTTCCTCTCTACATCTCTAACAAGGAGGCACACTCCTGAAACACTTCCTTCAGTGACAAAACCTCTCATACAGCCTACAGAAGATGAGCAGCAACAGAGACGTAGCTCTCATGCCTTGCTTCCACCTTCTAGGAGGTCTTCTTTGCTTAAAAAGGATTCCATTTCCAAGATTTCTCATGAAGTTCCTACTCGTCACTGCTCTTATGGACAGGCTGTGCTTAATGGCATAAATGTTCTTTGTGGAGTAGGAATCCTTTCTACCCCTTATGCTGCCAAAGAAGGTGGATGGATTGGGCTCTCTATCTTGTTCATTTTTGGGATTATTTCCTTCTATACTGGATTGCTCTTGCGTACCTGCTTGGACAGTGAACCTGGTCTTGAGACATACCCTGACATTGGCCAAGCTGCTTTTGGTACTACTGGACGTATTTTCATTTCAATAGTATTGTATGTGGAGTTATATGGTTGTTGCATTGAATATATAATTTTGGAGGGTGACAACCTCTCTACCTTATTCCCTAATGCATACTTAAATTTGGGTGGAATTGAATTGAATTCACAAACTCTGTTTGCTGTGATTGCCACCTTGGCTGTTCTTCCTACTGTTATGCTCCGTGACCTAAGCGTTCTCAGTTACATCTCAGCTGGTGGAGTTGTTGCATCAGTTTTGGTGATTATCTGCTTGTTCTGGGTTGGCATAGAAGATGTTGGCTTTCATAGCAAAGGGACAACACTCAACCTTGCAACTTTTCCTGTTGCCCTGGGTCTTTATGGTTACTGTTACTCAGGACATGCTGTGTTCCCAAACATTTATACTTCCATGGCAAATCCAAACCAATTCCCTGCAGTGCTCTTAGCATGTTTTGGAATTTGTACCTTGCTGTATGCTGGGGGTGCTGTTATGGGATACAAAATGTTTGGAGAAGCTGTACTCTCTCAGTTCACTCTTAACCTGCCCCAAGAGTTGGTAGCATCCAAGATTGCTGTTTGGACTACGGTTGTTAATCCATTTACCAAGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCATCAAACCATGCCAAGTCTTACCTATATGCCATCCTCATCAGAACAGGACTGGTAGTTTCTACACTGCTTATTGGTCTCTCAGTTCCCTTTTTTGGTCTGGTGATGTCATTGATTGGATCATTACTTACAATGCTTGTTACTTTGATACTACCCTGTGTTTGTTTCCTAAAAATCTTGCGGGGCAAAGTCACACGATTGCAGGTATGA 1539 0.4191 MNNSVSDNSFIIESDEEDEEKDLNKGEVDGNDSDSSNYSNENPPQRKPSSYNISWPQSYRQSIDLYSSVPSPNIGFLGTPSLSRLSSSFLSTSLTRRHTPETLPSVTKPLIQPTEDEQQQRRSSHALLPPSRRSSLLKKDSISKISHEVPTRHCSYGQAVLNGINVLCGVGILSTPYAAKEGGWIGLSILFIFGIISFYTGLLLRTCLDSEPGLETYPDIGQAAFGTTGRIFISIVLYVELYGCCIEYIILEGDNLSTLFPNAYLNLGGIELNSQTLFAVIATLAVLPTVMLRDLSVLSYISAGGVVASVLVIICLFWVGIEDVGFHSKGTTLNLATFPVALGLYGYCYSGHAVFPNIYTSMANPNQFPAVLLACFGICTLLYAGGAVMGYKMFGEAVLSQFTLNLPQELVASKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHAKSYLYAILIRTGLVVSTLLIGLSVPFFGLVMSLIGSLLTMLVTLILPCVCFLKILRGKVTRLQV. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07071 512 MobiDBLite consensus disorder prediction 30 53 - -
Seca8g07071 512 MobiDBLite consensus disorder prediction 1 53 - -
Seca8g07071 512 MobiDBLite consensus disorder prediction 93 130 - -
Seca8g07071 512 FunFam Amino acid transporter AVT1A 152 512 - -
Seca8g07071 512 MobiDBLite consensus disorder prediction 93 134 - -
Seca8g07071 512 Pfam Transmembrane amino acid transporter protein 155 508 IPR013057 -
Seca8g07071 512 PANTHER OS05G0424000 PROTEIN-RELATED 163 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07071 Seca-Chr8 166637979 166645066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07071 1 476 Amino Acid or Auxin Permease AAAP Family AT2G39130 71.488 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07071 K15015 - gmx:100775840 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07071 8 166637979 166645066 Seca8g07071 8 166637979 166645066 ECH