Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07067 ATGCTAGGCATTGTGTACAGAGACCTAAAACCAAATAATGTTCTAGTCAGAGATTCAGGCCACATAATGCTATCAGATTTTGATCTATCACTCCGCTGTTCAGTGAGTCCAACACTTGTAAAATGTTCATCTGCACATGTTCAGTGCCAGCTTTCCCTATATGCTAACAGTAGCAATTCCAATCCCACATTGACATACAAAGTGCTTTTTCACAATCTACATTAA 225 0.3867 MLGIVYRDLKPNNVLVRDSGHIMLSDFDLSLRCSVSPTLVKCSSAHVQCQLSLYANSSNSNPTLTYKVLFHNLH. 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07067 74 Gene3D Transferase(Phosphotransferase) domain 1 1 66 - -
Seca8g07067 74 SUPERFAMILY Protein kinase-like (PK-like) 2 37 IPR011009 -
Seca8g07067 74 ProSitePatterns Serine/Threonine protein kinases active-site signature. 4 16 IPR008271 GO:0004672|GO:0006468
Seca8g07067 74 Pfam Protein kinase domain 3 37 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07067 74 PANTHER FLIPPASE KINASE 1-RELATED 1 55 - -
Seca8g07067 74 ProSiteProfiles Protein kinase domain profile. 1 74 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07067 Seca-Chr8 166569443 166569667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07067 1 46 AGC Kinase Gene Family AT1G79250 91.304 1.53e-23 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca8g07067 Pkinase 3.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07067 - - bvg:104886817 88.5817