Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07056 ATGGGTGGGAGCGAGAACCCGAAGGCTGAGGTTGTGGGTCGTTTGGTTGAGTCCATCAAGGAGATTTCTGGGTTGCCGGAATGCCAGAACGTTTACAAGAGGATGTATGGGAATTTGGTTCGAAGGGTGAAGCTGTTGAGTCCTCTGTTTGAGGAATTGAAGGACAGTGATGAGTCCCTCAACGATGAACAGCTTGGAGCCTTTGAATCTCTCAGGGTTGCTTTGGATTCAGCTATGACCCTTCTAAAGTCTGTGAACCAAGGGAGTAAGCTTTATCTGGCTTTGCAGAGGAATGAAACAGTAGACAAGTTCCAACAAATAACTGAAAAAATTGAAGCTGCATTGAATGAAATTTCATACAATGAACTTGATATATCAGAGGAAGTTCAAGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAATCTCAATCAGAATTTGCTGATTTACAACTAGACGTGGATATGGCAGTAGCACAAAAGGAAAAAGACCCTGATCCTGCTATACTCAAAAGACTCTCTGAGAAGTTGCATTTGAGGACTATAAATGACCTCAAGAAAGAGTCTACTGAATTACATGAATTGGTTATCGCAAGTGATGGAGAACTAGGGGACTGTTTTGAAACAATCTCATCACTTCTTAGGAAACTGAAGGACTGTGTGCTCACAGAAAATCCTGAAGTTGACACCTTGGAATCCGAAAAAGGGTCAATTAAGCACCGGTCTCCTGTAATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTGATGAAAGATCCTGTAATTGTCTCTACTGGTCAGACATATGAAAGATCCTGCATACAAAAATGGCTTGATGCTGGTCACAGAACCTGCCCCAAGACTCAGCAGACGCTTTTGCATACAGCCCTTACTCCTAATTATGTTTTGAAGAGTCTGATTGCTTTATGGTGTGAAAGCAATGGCGTTGAGCTACCAAAGAAGCAAGGGAACTGTAGAACAAAGAAATCTGGAAGCAGTCTTTCAGATTGTGACAGAACTGCTATTAAAGCTTTATTGGATAAACTATCGAGCAATGACACAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGGTTGCTGGCGAAGAGGAATGCAGATAACAGAGTATGTATTGCTGAGGCAGGAGCAATACCACTTCTTGTAGAATTGTTGTCTTCCACAGATCCTCGAACTCAGGAGCATGCTGTTACAGCACTTCTCAATCTTTCCATCAATGAGAGTAACAAAGGAACTATAGTAAATGCAGGAGCTATACCAGATATTGTAGATGTACTGAAAAATGGCAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTCAGTTTATCTGTTCTAGATGAGAACAAAGTTGCAATAGGTGCAGCTGGAGCCATCCCAGCCCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCTATCTTTAATCTATCTATATATCAGGGAAACAAAGCAAGAGCTGTGAAAGCTGGTATAGTGGTTCCACTGATACAATTTCTAAAGGATGCTGGGGGTGGGATGGTAGATGAAGCACTAGCTATAATGGCAATCCTTGCAAGCCATCATGAAGGAAGGATAGCAATTGGTCAGGCTGAGCCAATCCCTACTCTTGTTGATGTTATACGAACCGGGTCACCACGTAACCGGGAGAATGCTGCTGCTGTCTTGTGGTCACTGTGCACAGGAGATCTACTGCAATTGAAACTAGCAAAGGAAGATGGTGCAGAACAAGCACTGCAGGAATTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGTATATTAGAACTGTTACAGCGAATGGAGGGGGAGGATAGTTTGCAAAATTCATAG 1893 0.4279 MGGSENPKAEVVGRLVESIKEISGLPECQNVYKRMYGNLVRRVKLLSPLFEELKDSDESLNDEQLGAFESLRVALDSAMTLLKSVNQGSKLYLALQRNETVDKFQQITEKIEAALNEISYNELDISEEVQEQIELVHAQFKRAKSQSEFADLQLDVDMAVAQKEKDPDPAILKRLSEKLHLRTINDLKKESTELHELVIASDGELGDCFETISSLLRKLKDCVLTENPEVDTLESEKGSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKKQGNCRTKKSGSSLSDCDRTAIKALLDKLSSNDTEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVVPLIQFLKDAGGGMVDEALAIMAILASHHEGRIAIGQAEPIPTLVDVIRTGSPRNRENAAAVLWSLCTGDLLQLKLAKEDGAEQALQELSENGTDRAKRKAGSILELLQRMEGEDSLQNS. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07056 630 Coils Coil 97 117 - -
Seca8g07056 630 FunFam RING-type E3 ubiquitin transferase 466 629 - -
Seca8g07056 630 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Seca8g07056 630 Gene3D - 457 623 IPR011989 -
Seca8g07056 630 CDD RING-Ubox_PUB 248 300 IPR045210 -
Seca8g07056 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Seca8g07056 630 Gene3D - 8 121 IPR036537 GO:0007166
Seca8g07056 630 Gene3D - 332 456 IPR011989 -
Seca8g07056 630 PANTHER U BOX DOMAIN-CONTAINING 34 618 - -
Seca8g07056 630 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Seca8g07056 630 SUPERFAMILY RING/U-box 239 322 - -
Seca8g07056 630 CDD MLKL_NTD 12 141 - -
Seca8g07056 630 SUPERFAMILY ARM repeat 342 618 IPR016024 -
Seca8g07056 630 FunFam RING-type E3 ubiquitin transferase 344 461 - -
Seca8g07056 630 Coils Coil 582 602 - -
Seca8g07056 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Seca8g07056 630 FunFam RING-type E3 ubiquitin transferase 247 320 - -
Seca8g07056 630 SMART arm_5 538 578 IPR000225 GO:0005515
Seca8g07056 630 SMART arm_5 374 414 IPR000225 GO:0005515
Seca8g07056 630 SMART arm_5 415 455 IPR000225 GO:0005515
Seca8g07056 630 SMART arm_5 456 496 IPR000225 GO:0005515
Seca8g07056 630 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Seca8g07056 630 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Seca8g07056 630 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Seca8g07056 630 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Seca8g07056 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07056 Seca-Chr8 166416627 166420422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07056 431 626 U-box Gene Family AT3G54850 31.472 1.88e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07056 - - gmx:100777452 1075.08