Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07038 ATGGCGGCTGCTTCCTCATCTTCACCATTCTTGGGAATCAGAGAAGAAAACCAAAGTCAGATTACACATCATCATCCATCCACCATATCTGCTTCTTCAGCTGCTCCCATCTTAGTGCCTCAAAAGAAAAGGAGGAATCAGCCTGGAACACCAAGCAAATTCATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAGAAGTCTACAAAAGAGCCAAGGAGAAAGGTATATCTGTGTCCAGAACCCACATGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAACACTACTCTCGCAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACCCTCTTCTCTAGGCGAGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCATTAGCTCAAGAGAGTGCAAGACACCCTAATGGCTTAAACCCTTTAGGGACTCATTTGTATGGCACAAATCACATGAGTTTAGGTCTATCCCAAGTGAGTAACCAAATTTCCCAATTCCAAAATCAGAACCAAACAGCTACTAACAACAACCACCACAACTTGTTGCGCCTTGGCAATGGTGGTGCAACAAAATTTGAGCACTTAAATATCCCACCTTTAAATCACCAATCTTCATTTGGAATACAATCATCACCACAATCAATCCCTTCCTCAGCTTTCTTCATGACTGAAACAAATCAAACATTTGAACATCATCATCACCAATCTCAACAATCCCCATTGATCTCAAGCAAGCAACTACATGGTCTAATGCAACTTCCTGATCTCCAAGGTAACCCCAATTCATCCTCCAATCTCTTCAACCTCAGCTTCTTTCCAAATAGCAGTAACAACACTGACCAATTCAACAACAACAACCAAGGAACATCACTTTATATTAACAACAACCTTGTGAGTAGTAGTGATCAAGTTGTTGGTTCAGGTTTGTCTTCACTCTTTGGAAACTCCTCATCATCAGTGCAAAATGAAAACATGTCTCCTCATATGTCTGCAACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACAACAAGCACCACCAAAGGTGGTTCCTCTCTACTAATAAGAGGAATGTGTAGTAGTTCATCAACCTACAATGACCCCAAATCTGACACTGAAAGGGACATTGTATCTGCTGATAATATTGTTGCCACTTTTGGAAGTGGCCATAGAAGGGGAGAAGGTATAAAATTAACCATGGAAAGTGACCACCACAATCTTCATGGGTTGATGAACTCTATTGCCAATGGGAACACGTCCATATTTGGGAATGAAAACAACCTTGGTCGGTTTCATAATGTGGAAGAATCTAACAATAAGTTGCACCAAAATCTTAATGTGAACTTTGGAGGAGGGTCTGATAAGTTGACATTGGATTTCTTGGGTGTTGGAGGAATGGTGAGAAATATGAATGGTGGATTTTCACAAAGTGAACAACAACGTGTCTTGGGTACTATGAGTTCTTTGAATCCTGACCTAAAATCAGCACATTCAAGCCAACATTTTGGAAGCTCAACGATGCAATGA 1689 0.4139 MAAASSSSPFLGIREENQSQITHHHPSTISASSAAPILVPQKKRRNQPGTPSKFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPNGLNPLGTHLYGTNHMSLGLSQVSNQISQFQNQNQTATNNNHHNLLRLGNGGATKFEHLNIPPLNHQSSFGIQSSPQSIPSSAFFMTETNQTFEHHHHQSQQSPLISSKQLHGLMQLPDLQGNPNSSSNLFNLSFFPNSSNNTDQFNNNNQGTSLYINNNLVSSSDQVVGSGLSSLFGNSSSSVQNENMSPHMSATALLQKAAQMGSTTSTTKGGSSLLIRGMCSSSSTYNDPKSDTERDIVSADNIVATFGSGHRRGEGIKLTMESDHHNLHGLMNSIANGNTSIFGNENNLGRFHNVEESNNKLHQNLNVNFGGGSDKLTLDFLGVGGMVRNMNGGFSQSEQQRVLGTMSSLNPDLKSAHSSQHFGSSTMQ. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07038 562 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Seca8g07038 562 SUPERFAMILY beta-beta-alpha zinc fingers 54 150 IPR036236 -
Seca8g07038 562 Gene3D Classic Zinc Finger 35 101 - -
Seca8g07038 562 Gene3D Classic Zinc Finger 108 187 - -
Seca8g07038 562 SMART c2h2final6 95 125 IPR013087 -
Seca8g07038 562 SMART c2h2final6 54 76 IPR013087 -
Seca8g07038 562 SMART c2h2final6 130 150 IPR013087 -
Seca8g07038 562 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
Seca8g07038 562 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 530 IPR031140 -
Seca8g07038 562 MobiDBLite consensus disorder prediction 543 562 - -
Seca8g07038 562 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Seca8g07038 562 Pfam Zinc-finger double-stranded RNA-binding 53 76 IPR022755 -
Seca8g07038 562 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07038 Seca-Chr8 166144620 166148746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07038 53 525 C2H2 Transcription Factor Family AT2G02080 46.436 3.64e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g07038 zf-C2H2_jaz 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07038 K25870 - gmx:100780268 601.282