Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07035 ATGGGAAGAAAGGGCAGTTATGAAAAACAAGATGTGAACAGAGGCGCTTGGTCTTCTGAGGAAGACAAAATCCTCATGAACTACGTTCAAATCCATGGGGAAGGAAAATGGACTGAGCTTTCCAAAAGATCTGGCTTGAAGCGATGTGGGAAGAGTTGTAGACTGCGATGGTTGAATTATCTCAAACCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGACCTCATTATCAGATTACATAACCTCCTCGGGAATAGATGGGCTCTCATTGCGGGGCGAATACCAGGGCGCACTGACAATGAGATAAAAAATTATTGGAATACTTATTTGAGAAAGAAGGTAGAGCAGCAAGCCAACCATAACAAACTCCCACGCCATACCAACCAAATTCCAATCAATTTAAGAGTTGAATATTCTCCTGGCTCCTCAAAAAATAACCCCTTGAATATCATTGATCCTACAGAATCGCTTATGATGCCAAATAATAATAATAATGACTCAATAATCAACACAGTGAATTTGGTTACAACAAGCTGTTGGGATGGCAAGAACATAAACGCTTCTGCTTCCACCCCACAAGGTGACTATGATTGCTCAACAGTTTTCCACAGAGACTTTAACATAAGTGACATGTTAATACCTTATGAGGATTTTCATTATAATAGATCATATGCTTGTGTCCAAATACCCCAACAATTTGGAGATGATGCCTTTAGGCTTGATGATTCAATCGGCAAAGAAGCATGGTATGAGAATTGGAAGATTGACGACTATTTTCCACTAGAACATGCTGTGGATTTTTCTTCATTTTCAAAGTTTCGGACTTGA 834 0.3933 MGRKGSYEKQDVNRGAWSSEEDKILMNYVQIHGEGKWTELSKRSGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHNLLGNRWALIAGRIPGRTDNEIKNYWNTYLRKKVEQQANHNKLPRHTNQIPINLRVEYSPGSSKNNPLNIIDPTESLMMPNNNNNDSIINTVNLVTTSCWDGKNINASASTPQGDYDCSTVFHRDFNISDMLIPYEDFHYNRSYACVQIPQQFGDDAFRLDDSIGKEAWYENWKIDDYFPLEHAVDFSSFSKFRT. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07035 277 CDD SANT 16 61 IPR001005 -
Seca8g07035 277 FunFam MYB-related transcription factor 13 66 - -
Seca8g07035 277 Gene3D - 70 133 - -
Seca8g07035 277 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca8g07035 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca8g07035 277 CDD SANT 71 112 IPR001005 -
Seca8g07035 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca8g07035 277 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca8g07035 277 Gene3D - 6 67 - -
Seca8g07035 277 SMART sant 66 114 IPR001005 -
Seca8g07035 277 SMART sant 13 63 IPR001005 -
Seca8g07035 277 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 162 - -
Seca8g07035 277 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca8g07035 277 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca8g07035 277 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07035 Seca-Chr8 166111512 166113904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07035 9 120 MYB Transcription Factor Family AT3G13540 68.750 9.01e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g07035 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07035 K09422 - gmx:100780809 349.747