Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07034 ATGGGAAGAAAGGGTAGTGATGATGATATTGTGAACAGAGGTGCTTGGTCTTCTGAAGAAGACAAAATCCTCATGAACTACGTTCAAGTCTATGGGGAACGAAAATGGAGAGAGCTTTCCAAAAGAGCTGGCTTGAAACGAAGTGGGAAGAGTTGCAGACTGAGATGGTTGAATTATCTCAAACCAGATATCAAGAGAGGAAATATTTCTTTGGAGGAAGAAGATCTCATTATCAGATTACATAACCTCCTCGGAAATAGGTGGTCTCTCATTGCGGGGCGATTACCAGGGCGCACTGATAATGAGATTAAGAATTATTGGAATACTTATTTGAGAAAGAAGGTAGAGCAAAATCTTGCCAACCATAACAACCTCCCTGCAGGCTATACCAACAAAATTCCCTTCAGATTAAGAGTTGAATATTCTCCTGGCTCCTCAAAAAATATTAACCCCTTGGATATCATTGATCCTACAGAATCGGTTATGGTGCCACATAATAATAATGACTACTCAGCCAACACAATGAATTTCATTAGCAAGAACAAGGACCCTTCTGCTTCCACCCCAGATGATGATCATGGCCATGGTTTTCTCAAGGACTTTGACATGTTAATTATACCCAATAATGATCATGAGGATTTTCATTTTAATAGAGTGCCCCTAAATGTTGGAGATGACGCCTTCAGGCTAATTGACGATTCAATCGGCGAAGCATGGTTTGAGAATTGGAAGATTGACGACTATTTGGTGTGA 753 0.4024 MGRKGSDDDIVNRGAWSSEEDKILMNYVQVYGERKWRELSKRAGLKRSGKSCRLRWLNYLKPDIKRGNISLEEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEQNLANHNNLPAGYTNKIPFRLRVEYSPGSSKNINPLDIIDPTESVMVPHNNNDYSANTMNFISKNKDPSASTPDDDHGHGFLKDFDMLIIPNNDHEDFHFNRVPLNVGDDAFRLIDDSIGEAWFENWKIDDYLV. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07034 250 CDD SANT 70 111 IPR001005 -
Seca8g07034 250 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Seca8g07034 250 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Seca8g07034 250 SMART sant 12 62 IPR001005 -
Seca8g07034 250 SMART sant 65 113 IPR001005 -
Seca8g07034 250 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Seca8g07034 250 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 146 - -
Seca8g07034 250 CDD SANT 15 60 IPR001005 -
Seca8g07034 250 Pfam Myb-like DNA-binding domain 16 75 - -
Seca8g07034 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Seca8g07034 250 Gene3D - 69 132 - -
Seca8g07034 250 FunFam MYB-related transcription factor 12 65 - -
Seca8g07034 250 Gene3D - 13 65 - -
Seca8g07034 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07034 Seca-Chr8 166083838 166085832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07034 11 115 MYB Transcription Factor Family AT3G13540 69.524 6.49e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g07034 Myb_DNA-bind_6 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07034 K09422 - gmx:547459 286.574