Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07023 ATGATGCCCCCTGAGCAAGAAACCACTATTGCACCAAACATTCCACCCATCACAAACCGACCCGAAAACACCACCATCCACGTCGATCCAGAAGCTTCTATCACCAACAAAGTCAAACCCAGTTTCGATGACAACGCCATTCCTCCACAGCCGCAACCAACAACACCAACACCATCCTTTTCCATTCTTCACCAATCCCTCCGTCCCGTTACCCTCAAATTTGAAGATGTTTCGTACAGTATAACCTTCCCAAGACAAAAGAACAAGAGTTGTGTATTGGCAAAAGAAGCAAAGGTAACGAGAAAAGTACTAACCGGTGTTACCGGCGTAGCGAGTTCCGGCGAGTTGACGGCAATGCTAGGTCCTTCAGGGAGTGGTAAGACCACGCTTCTAACCGCCCTTGCCGGAAGGCTTGCCGGAAAAGTCTCCGGCAGCATAACATACAACGGCAACTCAGACCCGGCGTGCATGAAGCGCAAGATAGGGTTCGTGTCTCAAGACGACGTCGTTTATCCTCACCTCACGGTTCTCGAAACGCTTACCTACGCTGCTTTATTGAGGCTGCCAAAGACTCTGAGCAAGGAAGAGAAAGTGGAGCATGCAGAGAGGGTGATTTCGGAGCTTGGACTCACACGGTGTCGTAATAGCCCCGTCGGCGGTTGCATGGGGCTGTTCCGTGGAATCTCCGGTGGGGAAAGAAAACGGGTGAGTATCGGGCAGGAGATGTTGGTGAACCCGAGTTTGTTGTTATTGGATGAACCGACGTCCGGTCTGGACTCAACCACGGCTCAGCTTATTGTTTCGGTTCTTCGTGGACTCGCCCGGGCCGGTCGAACCGTTGTGACCACCATTCATCAACCGTCGAGCCGGTTGTACAGGATGTTTGATAAAGTGGTTGTGCTTTCTGACGGTTACCCGATTTATAGTGGTCATGCGGATCGGGTCATGGATTATCTTGAATCCGTTGGATATGTGCCAGCTTTCAATTTTGTCAACCCGGCAGATTTTCTACTTGATCTTGCTAATGGCATAGTTGCTGATGTCAAGCATGATGATCAGACAGACCACCATGAGGATCAAGCTTCAGTCAAACAGTCCCTAATTTCATCTTATAAGAAAAACTTATATCCTGCTCTAAAAGAAGAGATTCTACGAAATAACAATGAATCAGTGGCTTTTACATCAGGAATACCTAGACGCTTGGTAGGTTCTGATAACCAATGGGCCACTAGCTGGTGGGAGCAATTCAGGGTGCTGCTTAAAAGGGGTTTACAGGAGAGGAGGCATGAATCCTTTTCTGGCTTAAGGATTTTCCAAGTCTTGTCTGTATCCATTCTTTCAGGACTTTTGTGGTGGCACTCTGATCCCTCACACATACAAGATCAGGTAGGACTCCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTTAATGCCATCTTTGCATTTCCTCTGGAGAGGCCAATGCTAATAAAAGAAAGATCATCAGGCATGTACCATCTCTCCTCCTACTATGTTGCTCGGATGGTGGGAGACTTACCAATGGAGCTTGTGCTTCCTACCATTTTTGTAACTATCACTTATTGGATGGGTGGTCTCAAGCCTTCCCTGGTTACATTTGTGTTAACCCTCTTGATCATGCTTTTTAATGTTCTAGTCTCTCAAGGAATAGGCCTAGCACTTGGTGCCATTCTCATGGATGTGAAGCAGGCCACAACTCTAGCTTCAGTGACCATGCTGGTGTTTCTGTTAGCTGGTGGTTACTACATTCAGCAAATGCCCTCTTTTATAGCTTGGTTAAAGTACATTTCTTTCAGTCACTACTGCTATAAGCTGCTGGTAGGAGTCCAGTATTCAGTAAACGAGGTCTATGAGTGTGGACCAGGATTGCATTGTAGGGTAAGAGATTTTCCAGCCATAAAGTGTCTAGGGCTTGATAATATGTGGGGAGATGTTGCTGCTTTGACTGTAATGTTGATTGGATACAGAATTGTGGCATATCTAGCTTTGAGGATGGGACAGCCTCACTGA 2037 0.4698 MMPPEQETTIAPNIPPITNRPENTTIHVDPEASITNKVKPSFDDNAIPPQPQPTTPTPSFSILHQSLRPVTLKFEDVSYSITFPRQKNKSCVLAKEAKVTRKVLTGVTGVASSGELTAMLGPSGSGKTTLLTALAGRLAGKVSGSITYNGNSDPACMKRKIGFVSQDDVVYPHLTVLETLTYAALLRLPKTLSKEEKVEHAERVISELGLTRCRNSPVGGCMGLFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQLIVSVLRGLARAGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGHADRVMDYLESVGYVPAFNFVNPADFLLDLANGIVADVKHDDQTDHHEDQASVKQSLISSYKKNLYPALKEEILRNNNESVAFTSGIPRRLVGSDNQWATSWWEQFRVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYHLSSYYVARMVGDLPMELVLPTIFVTITYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPSFIAWLKYISFSHYCYKLLVGVQYSVNEVYECGPGLHCRVRDFPAIKCLGLDNMWGDVAALTVMLIGYRIVAYLALRMGQPH. 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07023 678 Gene3D - 64 324 IPR027417 -
Seca8g07023 678 MobiDBLite consensus disorder prediction 11 31 - -
Seca8g07023 678 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 328 IPR003439 GO:0005524
Seca8g07023 678 MobiDBLite consensus disorder prediction 1 59 - -
Seca8g07023 678 ProSitePatterns ABC transporters family signature. 228 242 IPR017871 GO:0005524|GO:0016887
Seca8g07023 678 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 50 669 - -
Seca8g07023 678 FunFam ABC transporter G family member 22 91 322 - -
Seca8g07023 678 Pfam ABC-2 type transporter 414 620 IPR013525 GO:0016020|GO:0140359
Seca8g07023 678 Pfam ABC-2 type transporter 285 371 IPR043926 GO:0140359
Seca8g07023 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 321 IPR027417 -
Seca8g07023 678 SMART AAA_5 113 306 IPR003593 GO:0016887
Seca8g07023 678 Pfam ABC transporter 107 256 IPR003439 GO:0005524
Seca8g07023 678 CDD ABCG_EPDR 69 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07023 Seca-Chr8 165924982 165929545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07023 102 304 Calmodulin-binding Proteins AT2G36910 30.986 1.05e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07023 K05681 - gmx:100792991 1151.73