Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07007 ATGGCTGGACCATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAGAGTGCATCTGGAGCATGTGGAAAAGTTATATGGAAAAGCAATCCCACAAGAGCTTGCCCAAATTGTCAACATGTTATCGACAACAGTGATGTAGCACAAGAGTGGCCTGGACTACCTAAAGGTGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTGGTGCAGGAAATTCAAAACCCCATCCTTTCATAGATGAATTTATTACTACTCTTGAAGTGGAAGATGGCATTTGTTATACTCATCCTCAACATTTACCAGGTGTCAAGCAAGATGGAAGTGCTTCCCACTTTTTCCATAGAGCAATCAAAGCTTATAATACTGGCAGTCGAAAGCGTCGAAAAATATATGGACAGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAAGACTAAACCTGTCATCATGAATGGGGTTCAAAAAGGCTGTAAAAAAATTATGGTTCTGTATATGATCCTGGTTAGGGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTAGGAACAGAAGAGGATGAAAAGGATGGAGAGTATGTTATCTCTAAAGTGTTTTACCAGCAGCAGCAGATCAAATTGGGTGAAAAGGATGATCAGGATATTCCTGAAACCACTGAAGCAACTATTGTGAAAGTGGATCCAGTTATTGAAAAAGATGAGCAGGATATTCCTGAAACCACCGAAGCAACTATCGTGAAAGTGGATCCAATTACTCCCAAATCTGTGACTCCTGAACCCCCTCGTAATGAAAAACGATGTTCAGATCTAGATCCAGAACAAGAATCACATCATATTCCTCAGTTTGATGGTCTAGATAATATCCAGGCTGGCTGTGAAGAGTTTGCAAAAAATGATCAATCGATGGTAGAAACTCATAATAATGAAGGGATAGATAATATAGAAAATAATGTTAATGAAGACTCAAAATGGTGGGATAGTGAGTCACAGAATCTGTTGGATTCACAGCAACTTGTTGAAGCATTGGCCTTGTGTGATGATCTCCTTCAAAGCCAGTCTCCCAATAGGGATGGTGAAAATGGAAAACATAAGGAGCGACCTAGTCTTTCTGTATATGCTCATCTAGGACCAGAACATCTGAAGAAAGATATTGAAGATTGCCAAAATCTTGTCCTTGACAATGCAAATGTAGAGCTTGAGATGCCACATTCAGAGTTTCGACTAAGTCAGCTGGAATTCAGCTCACAGGATAGCTTTATTTCCTGGGGTGGCAGCAAGGCAGTCAACTAA 1329 0.3995 MAGPSWLVDKSRIATKIKSASGACGKVIWKSNPTRACPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGAGNSKPHPFIDEFITTLEVEDGICYTHPQHLPGVKQDGSASHFFHRAIKAYNTGSRKRRKIYGQDFGDVRWHKTGKTKPVIMNGVQKGCKKIMVLYMILVRGGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQQIKLGEKDDQDIPETTEATIVKVDPVIEKDEQDIPETTEATIVKVDPITPKSVTPEPPRNEKRCSDLDPEQESHHIPQFDGLDNIQAGCEEFAKNDQSMVETHNNEGIDNIENNVNEDSKWWDSESQNLLDSQQLVEALALCDDLLQSQSPNRDGENGKHKERPSLSVYAHLGPEHLKKDIEDCQNLVLDNANVELEMPHSEFRLSQLEFSSQDSFISWGGSKAVN. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07007 442 MobiDBLite consensus disorder prediction 272 293 - -
Seca8g07007 442 MobiDBLite consensus disorder prediction 262 294 - -
Seca8g07007 442 Gene3D NAC domain 65 219 IPR036093 GO:0003677|GO:0006355
Seca8g07007 442 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 401 IPR044799 GO:0003700
Seca8g07007 442 FunFam NAC domain-containing protein 8 65 218 - -
Seca8g07007 442 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
Seca8g07007 442 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
Seca8g07007 442 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07007 Seca-Chr8 165690024 165695566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07007 28 221 NAC Transcription Factor Family AT1G28470 57.000 6.11e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g07007 NAM 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07007 - - gmx:100787422 732.25