Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06994 ATGGAAGTTATGTCTCTGTCTGTCACCTTCGGCAAATGTCTAACCTTTTCTTCTGTGAACCCAAAGAGAACCCAAATTCAGGAACTTCCAATAAATTTAAGATTACCCAACAAAAGGAATCATTCCAATCCTTCTTCTTCCATTTCATGTGAGTGGTCCTTTACTAGGACAGCAGCAACAACATACCCTTCCTTCACTCCCTCCACCACCCAGAATCGCCATTGGATGGTGCTCATGGACAAGCCTCCTCATGGGGTCAATTCCAAGCCACAAGTCATTGATTATTATGTGAAGACTCTACAGCAAGTTCTGGGCAGTGAGAAAGCTGCTCAAATGTGTCTATATGATGCTTCCTGGGATACACACTTTGGTTTTTGTTGTGACATTGATGAAGAAATTTCCTCCCAGTTGGCCAGTTTACCTGGGGTCTTGTCGGTTAGGCCTGATCCGGATTTCAACTCTTTGAAAAAGGACTATAGTTTATCAAGTGGCCAGGCAGGTTACCCTTCAAGATTACAGACTAAAAGCAATATGTTGTTCCCTGCTGGAAATTCAAAGCATTGGCTTGTTAGAATGGATAAACCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTCGACTATTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATATCATGTTTCCTGGAAAACCAACTTTGGTTTTTGTTGTGAACTTGATGAGGAATGTGCACAAGAGCTAGCCGGTGTGCCCGGGGTCTTATCAGTTCAGCCAGATGACAATTTTGAGTCCGAAAATAAGGATTATGAAGGTAGTAACTTGGAAAATATTTTGAATGTGCCAAACTCTTCAGAAGCAAGTCAGGAAGCTTCCTTGAAAACAAAGAAACTTTTTGTGACAGGCCTATCATTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATAGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGAGTAACCCGCCAAGATACAACAGCGGTCGTGCCAGACCATCAGCTTGA 1173 0.4177 MEVMSLSVTFGKCLTFSSVNPKRTQIQELPINLRLPNKRNHSNPSSSISCEWSFTRTAATTYPSFTPSTTQNRHWMVLMDKPPHGVNSKPQVIDYYVKTLQQVLGSEKAAQMCLYDASWDTHFGFCCDIDEEISSQLASLPGVLSVRPDPDFNSLKKDYSLSSGQAGYPSRLQTKSNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEECAQELAGVPGVLSVQPDDNFESENKDYEGSNLENILNVPNSSEASQEASLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKSNPPRYNSGRARPSA. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06994 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 177 266 IPR037045 -
Seca8g06994 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 58 153 IPR037045 -
Seca8g06994 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 366 IPR000504 GO:0003723
Seca8g06994 390 SUPERFAMILY RNA-binding domain, RBD 284 387 IPR035979 GO:0003676
Seca8g06994 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Seca8g06994 390 FunFam Organelle RRM domain-containing protein 1, chloroplastic 266 390 - -
Seca8g06994 390 FunFam Organelle RRM domain-containing protein 1, chloroplastic 176 265 - -
Seca8g06994 390 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 174 367 IPR039206 GO:0016554
Seca8g06994 390 SMART rrm1_1 299 372 IPR000504 GO:0003723
Seca8g06994 390 Gene3D - 268 390 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06994 Seca-Chr8 165483341 165486641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06994 290 380 C2H2 Transcription Factor Family AT2G19380 31.868 1.42e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06994 - - gmx:100791652 651.358