Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca8g06979 | ATGATTTCATCAGGTATTAACTTGGTAATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTTTTTTCGTCTGCACCAGACTCATCTGTGCTCGAATTCACTTGAACGCTTCAAGGAGAGCCTTTCGTATTGCTTCCAGATCCAATCTCAGCATGATGGAGCGGGGTAGCCATGGTCTTGAAAGCATAGCTGTCGCCAAATTTCCAACAAAGAAGTTCAGTGACAAATTTTTTGCTTCTGCAGAAAATTCTCAATGCACAGTCTGCCTTTCAGAGTACCAAGATGATGATATGCTGCGTATCCTCCCCTATTGTGGACACTCCTTCCATGTGACATGCATAGACTTATGGCTTCAGCAGAATTCCACTTGTCCTGTTTGTCGAATATCACTGCGTGAATTTCCCGAGAGAAAGCGATTAATGCAACCCCAATTCAGCTCTGCCTTGCAACCTCATAATGGCATGGAGTCCTTTGACACTCAACATTATCACTGTATAATGGTTGATAATGGATTATCATCAAGAACTCCTGAGAATGATCGGGTGAACCCTATACAAGAGAATCATTTTCCATCTGAGGGTGATGGAGCAGTTGCTATGGACAATATCACCTGTTTAAGTCAGGGTGATTTCATTAAAGATGAAGGGAAGAAGCATGTAGAGAGCCCATCAAATTTCTAG | 684 | 0.4269 | MISSGINLVMTVIGFAVSTMFIFFVCTRLICARIHLNASRRAFRIASRSNLSMMERGSHGLESIAVAKFPTKKFSDKFFASAENSQCTVCLSEYQDDDMLRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPERKRLMQPQFSSALQPHNGMESFDTQHYHCIMVDNGLSSRTPENDRVNPIQENHFPSEGDGAVAMDNITCLSQGDFIKDEGKKHVESPSNF. | 228 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca8g06979 | 227 | Pfam | Ring finger domain | 86 | 129 | IPR001841 | - | |
| Seca8g06979 | 227 | CDD | RING-H2_EL5-like | 86 | 129 | - | - | |
| Seca8g06979 | 227 | PANTHER | OS11G0150450 PROTEIN | 1 | 189 | - | - | |
| Seca8g06979 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 134 | IPR013083 | - | |
| Seca8g06979 | 227 | SUPERFAMILY | RING/U-box | 82 | 135 | - | - | |
| Seca8g06979 | 227 | FunFam | E3 ubiquitin-protein ligase ATL6 | 49 | 135 | - | - | |
| Seca8g06979 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 129 | IPR001841 | - | |
| Seca8g06979 | 227 | SMART | ring_2 | 87 | 128 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca8g06979 | Seca-Chr8 | 165262789 | 165265236 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca8g06979 | 3 | 132 | C3H Transcription Factor Family | AT1G04360 | 34.028 | 1.50e-20 | 87.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca8g06979 | - | - | gmx:100786109 | 415.231 |