Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06977 ATGGGTGACCCATATGGGTTGCCGGAGGATCTCCGGCGGCTGATATCATCAAGAACCCATTTAACCAACACTCATATAACAGAACCACTGTGTGTGTATGGTGTGAATGCTAATGCTAATGGTGGTGCTTCTTCTACTTTTCCTCCACCAAATAGCTATGACTATGAGCCTCACAATAACATCATGGTTGGGGACGTTTTCTTCCCTCGTGGCTTCACTCACTATCCTCATCATCATCATGATCACTATTCCTCCACTAGTGTCAATCCAACATCAAGTAACAATGTTGCTGTTGCCACTGCTTCTGCATTCTGTAGCATAGAAAAAGGGTGGCCTGGTCTTGATTCTGGAAACAACAGGTGGCCTAGACAAGAGACTCTTTCTCTTCTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACTAAGGAAGGTAAAGCTAGTAGACAAGATGGAAAGCATTACAGATTCTTTAGGCAGCTTGAAGCAATATGTGGAGAAGCAGCAAGCAGTGCTCATGCTTCAACTTCAGATAAAACCCATCATCATCATGGTGCTGGAAACACTACTGTTGGTGTTCAAACTCCAAGTTTCACAACTAACCATGACAATAATGGTGGTGACTTTCATAATAATAATAACAACCTCAAGTGTTCAGAGAGCCTGAGTTTCTCAAATTCATCTGAATTTGAGACATCTTCATCTGAGAACAATGATGAGGATCTTTCAGCTATTGCATACATGATGAAACAGTCAAGGGATAAGCAGAAAGGGTTAGACTTAGACCAGAGACAAAGTAGTAGTCATAGGAGGGTGAGAAAAAGCTGGAGGGCTAAAGTGGAGGAGATTGTGGATTCTCACATGAGGAAGATCATAGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAACAAAGAGAGAAAGAAATGGCATCTAAAGAGGAAGAGAGGAAGAAAAAAGAGTCAATGAGGTTTGACCAAGAAGTGCATCAACTTTGGGCTAAAGAGAAAGCATGGGTTGAAGCAAGAGATGCTGCATTGGTAGAAGTTGTAAAGAAACACATTGGGATAGAGCTTGAAGGTATGGTTGAAGAACCAACAAATAATAAGAACAAGAGATCAGTACAGGAGGCAATAAATGATGTTAATAATGAGTATCCCTGCAGTGAAGGTGTGGATCATAGATGGACAGAGATGGAGATTTCAAATTTGATACAATTAAGGACTGGTTTTGAACAGCGAGTCAGAGAAAATGGGTATTTGGAGAATGAAATTTGGGGTGAAATAGCAGAAAAAATGGTGTGTTTGGGGTTTGATAGGAATGCAGATGAGTGTAAGCAAATATGGAATGAGATCAGCATCTCTCTGAGAAGGACAGTGGAGTGTGGTGGTAGTGCTAAAACCAAGCCTTGGTGTTTGGGACTTAAGCTGACAGATGATGATGACATTTGA 1587 0.4083 MGDPYGLPEDLRRLISSRTHLTNTHITEPLCVYGVNANANGGASSTFPPPNSYDYEPHNNIMVGDVFFPRGFTHYPHHHHDHYSSTSVNPTSSNNVAVATASAFCSIEKGWPGLDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEAASSAHASTSDKTHHHHGAGNTTVGVQTPSFTTNHDNNGGDFHNNNNNLKCSESLSFSNSSEFETSSSENNDEDLSAIAYMMKQSRDKQKGLDLDQRQSSSHRRVRKSWRAKVEEIVDSHMRKIIETQDAWMERMLSVVEQREKEMASKEEERKKKESMRFDQEVHQLWAKEKAWVEARDAALVEVVKKHIGIELEGMVEEPTNNKNKRSVQEAINDVNNEYPCSEGVDHRWTEMEISNLIQLRTGFEQRVRENGYLENEIWGEIAEKMVCLGFDRNADECKQIWNEISISLRRTVECGGSAKTKPWCLGLKLTDDDDI. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06977 528 Pfam Myb/SANT-like DNA-binding domain 119 206 IPR044822 -
Seca8g06977 528 Pfam Myb/SANT-like DNA-binding domain 439 507 IPR044822 -
Seca8g06977 528 Gene3D - 441 503 - -
Seca8g06977 528 Gene3D - 121 183 - -
Seca8g06977 528 PANTHER FI21293P1 91 507 - -
Seca8g06977 528 FunFam trihelix transcription factor PTL-like 121 183 - -
Seca8g06977 528 MobiDBLite consensus disorder prediction 229 256 - -
Seca8g06977 528 ProSiteProfiles Myb-like domain profile. 119 178 IPR001005 -
Seca8g06977 528 SMART sant 117 180 IPR001005 -
Seca8g06977 528 SMART sant 437 500 IPR001005 -
Seca8g06977 528 Coils Coil 341 368 - -
Seca8g06977 528 CDD GT1 119 185 - -
Seca8g06977 528 ProSiteProfiles Myb-like domain profile. 440 498 IPR001005 -
Seca8g06977 528 MobiDBLite consensus disorder prediction 216 256 - -
Seca8g06977 528 MobiDBLite consensus disorder prediction 295 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06977 Seca-Chr8 165218263 165220740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06977 120 503 Trihelix Transcription Factor Family AT5G03680 43.176 3.98e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca8g06977 Myb_DNA-bind_4 4.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06977 - - gmx:100787750 670.618