Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06975 ATGACCTTGACTCGGTCGAGTTGCCTCCAGAACTCACCAACCCGAAGCAGCAACCGTATTGATTCGAGTCGACTCTTAGCGTCCTCAACAACAATCTCGATGAGCTCAAGTCTTGGAAGAATGGGGCGCGTTCGGATGAAGACGATGAAGAAGTCGTCTCGGCAAGTGATAGAGAGGTACTACTCTCGGATGACGATAGACTTCCACACGAACAAGAAGGTTCTGGAGGAAGTGGCGAGTGTGCTCTTGACCAGGGTCCTAGTGGTGGCCCTAACCACATTGCCTCAAGAAGATTTGGATTTGGAGAGGCCTTCTGCAATCCAACAAAGGGGAATTGTTCCCTTCTGCAAAGGTCTGGATGTGATTCAACAGGCTCAATCTGGAACTGGGAAGACCACAACATTCTGTTTTGGAATTTTACAGCAGCTTGATTATGGTTTGGTTCAGTGTCTTGTGTTAAAGTTCATGCTTGTGTTGCAAAGTTGTTTCGTACAATTTGGAATCATGTCTTGGTGCACGTTTGAGTTTGATCCTGGTGTATTTATAGAAATTATTCAGCAAATGCAAGTGAAAGATGTGTAA 582 0.4553 MTLTRSSCLQNSPTRSSNRIDSSRLLASSTTISMSSSLGRMGRVRMKTMKKSSRQVIERYYSRMTIDFHTNKKVLEEVASVLLTRVLVVALTTLPQEDLDLERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTTTFCFGILQQLDYGLVQCLVLKFMLVLQSCFVQFGIMSWCTFEFDPGVFIEIIQQMQVKDV. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06975 193 Gene3D - 85 158 IPR027417 -
Seca8g06975 193 Pfam Ribosomal S17 41 82 IPR001210 GO:0003735|GO:0005840|GO:0006412
Seca8g06975 193 Gene3D - 41 84 IPR036401 GO:0003735|GO:0005840|GO:0006412
Seca8g06975 193 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g06975 193 SUPERFAMILY Rps17e-like 41 82 IPR036401 GO:0003735|GO:0005840|GO:0006412
Seca8g06975 193 PANTHER 40S RIBOSOMAL PROTEIN S17 41 81 IPR001210 GO:0003735|GO:0005840|GO:0006412
Seca8g06975 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 153 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06975 Seca-Chr8 165176350 165177620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06975 101 153 Eukaryotic Initiation Factors Gene Family AT3G13920 81.132 2.20e-24 97.1