Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06970 ATGATGGTAAGCCAAAGGATTGAACAACATATTATGTCAGAAGGGAAAAAGAAGAAGAAAAAGAAGAGGAAGAAGGAAGTCTTGCTTCCTCGTCCTGCATGCTCATGGGTCTATTTTAGCAAGGAGTTTATCAAAGAGTACATTGCCTCCCATCCTGAGTCACCAGGCCTTAAAGCTGCAACAAAGGCTGCCTCAAATGCTTGGAAGTCCATGAGTCTTGAGGAGAAGGAAAAATACACTAGACATGCTCGTGAAGTGTGGGATGGCTACTTGAGTTCAACTGCTGCCCCTATCACCAAGCCAAGGAAACAGGCTAAACTGGTGACAAGATGCTCTCCTGGCCGTGTATTCAATGTGTTACAGCGGCTCACGCCTGAACAGAAGGAAGCAGTTAAGAGCATGGGATTTGGAAGTCTCCTTGGCCTTAGATGCCGAACACTTCGGCGCAGTTTGTGTCTTTGGTTATTGGAGAGGTTTGACACTATTAATTGCAGCTTGGAGATCTGCAATGAGCACATGCCATTAACTCCAAAAGATGTGGAGATAGTAATGGGATTGTCAGCCAGTGGGAAAGAAGTGGTGAACTCAGGTCCAGAAGTCTTGATTTCAGGTTTACGTAGCAGTTATAATGCGGAAAATCATGGAATTTCAGTGCGGCTTTTGGAGGAGCGGTTGGCAACTGCAGAGGCTGGAGATGATTTTAAGAGGTCATTTGTTCTCTATGTGCTGGGAACGCTTCTGTCCCCAACAGCTAGGCTGGATGTTAGCCCATCATTCCTCCATTTTTTGACAAATATGGATCTTGTCCATCAGTACGACTGGGGTAAATTCTTGCTTGATAGGCTGGTTCGAGAGGTATCACGCTTCCGTCAAGGGAAGCAAAGAGCTGTTGGTGGTTGTCTCTTGTTTTTGCAGGTATGCTTTTCTACTATGAGAGCATATCTCTTGAGGGGTGCTTTAGCTTCAACTATTGTACCATATCTGTTTTCTTGGGGAGAGGAGGAGATTGCTGAGAGAGAAAAACAAGAAAAGGAACTTGGAGGCTACGGTTTTGGGAAGGTAACAGGCAAGAAGAAATGCCATAATTTGAAACTCCCAGAATACACAAATCATATAGATGGCCCACCAATCAACTCAGAAAGCACCAGGACTGGGCATGGTCCTCTGCCTGAACCAGAATCAAACCAAAACCAGGTCACAATGCCATTGCCATTCTTTATTGCTTGCCTCTTCGCATGCCACGAGTGCATGTCAAAAGACACTGTTTTATGGGCCTAA 1278 0.4523 MMVSQRIEQHIMSEGKKKKKKKRKKEVLLPRPACSWVYFSKEFIKEYIASHPESPGLKAATKAASNAWKSMSLEEKEKYTRHAREVWDGYLSSTAAPITKPRKQAKLVTRCSPGRVFNVLQRLTPEQKEAVKSMGFGSLLGLRCRTLRRSLCLWLLERFDTINCSLEICNEHMPLTPKDVEIVMGLSASGKEVVNSGPEVLISGLRSSYNAENHGISVRLLEERLATAEAGDDFKRSFVLYVLGTLLSPTARLDVSPSFLHFLTNMDLVHQYDWGKFLLDRLVREVSRFRQGKQRAVGGCLLFLQVCFSTMRAYLLRGALASTIVPYLFSWGEEEIAEREKQEKELGGYGFGKVTGKKKCHNLKLPEYTNHIDGPPINSESTRTGHGPLPEPESNQNQVTMPLPFFIACLFACHECMSKDTVLWA. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06970 425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 29 85 IPR009071 -
Seca8g06970 425 SUPERFAMILY HMG-box 12 91 IPR036910 -
Seca8g06970 425 Gene3D High mobility group box domain 12 93 IPR036910 -
Seca8g06970 425 MobiDBLite consensus disorder prediction 369 395 - -
Seca8g06970 425 Pfam HMG (high mobility group) box 30 92 IPR009071 -
Seca8g06970 425 CDD HMG-box_SF 31 90 - -
Seca8g06970 425 PANTHER OS07G0283600 PROTEIN-RELATED 93 404 - -
Seca8g06970 425 SMART hmgende2 28 99 IPR009071 -
Seca8g06970 425 MobiDBLite consensus disorder prediction 1 25 - -
Seca8g06970 425 MobiDBLite consensus disorder prediction 374 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06970 Seca-Chr8 165050944 165053972 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca8g06970 HMG_box 1.2e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06970 - - gmx:100782920 604.749