Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06965 ATGGCCACTGAAGATTACCCTCTTCTCGACTCTCCCTCTCACGCGCAGCCCCACCTCCACGCTCCCACGCGCCACCACTTCACTTCCTCCTCTTCTTCCAGTCCCACCACTCTCCCTGCCAGCGACAACGGCTACCACCGCCCTTCCTTCTCCGACGCTGCCGACGACTCCTCCGGTCCGGCCAAATCCGGCTCCACCGTCCTCATCCCTAACTCCAAGCGCGCCTCCGCCGCCGGTATCTCCTACTACTACAACAAGAAACCAAAGTCCTCCTCCGGCGCCGATTCCGTTCCGGCGAACGACGCGGCGTTTCACGGTGGCGATTACCGGAAGGACCGGGAGGAGTGGAGCGACACGGCGATCGCGTGCCTATTGGAGGTGTACACGGAGAAATTCAAGCAGCTGAACCGCGGGAACATCCGTGGAAGAGACTGGGAGGAGGTGGCGGCGGCGGTGGGGGAGCAGTGTGGCGGCGGCGGCGGGGAGAAGCAGTACAAGAGCGTGGAGCAGTGTAAGAACAAGATTGATAATTTGAAGAAGAGGTACAAAGTGGAGCTTCAGAGAATTGGGAGTGGGGGAATTACCACTAGTCACTGGCATTGGTTTAAGAAGATTGAAGCAATTGTTGGAAACTCTCTATCACTGAAAACTGTATCTGATGATGAGAAGGGCGGTGTTGGTGGTGCTTCTTCTTCTTCTACTGCTAGACAAACCAATAACAGATATGCACCTAGCAATGCTGCCATGGCAAACAACCTCAAAATGAAACTGGCATCCAATCTAAAATGGCATCGAGTTTTGTTTAAAATTAGTGGCTCGGCATTGGCTGGAAACTGCCAGAATATTGACCCCAAGGTGGCAATGCAGATTGCTAGGGAAGTTGCAACAGCTTGCCGCCTTGGGGTGGAGGTTGCCATTGTTGTTGGTGGTCGTAACTTCTTTTGTGGAGATGCATGGGTGTCTGCTACTGGGTTGGATAGACCTACGGCATACCAAATTGGTATGATGGCAACAGTTATGAATTCTATTTTGCTTCAATCTGCTCTTGAGAAGCTGGGTGTTCAGGCACGGGTTCAGAGTGCATTCTCATTGCCAGAGGTTGCTGAACCATATAGCAGGCAACGAGCTATTAGACATCTTGAGAAAGGAAGGGTTGTTATATTTGGTGGTGTTGGTGCTGGCACTGGAAATCCACTTTTTACCACTGATACTGCTGCAGCTCTCAGAGCTTCTGAGCTTAATGCTGAAGCCGTTCTGAAAGGTACTAATGTGAATGGTGTATTTGACTGCCATCTCCGTAATGACAATGTAACACTTGATCACATTTCCTTTAGGGAAGTTGTTTCTAGGGGCATCACCTCCATGGATATGATGGCACTAGCATACTGTGAAGAGAATGGAATACCTGTTGTAGTCTTCAACTTGCTTGAACCGGGGAATGTTTCAAGAGCATTATGTGGAGATCATGTTGGCACTTTGATCGATCAAACAGGAAGAGTGGAACATCAGCTTCCTAGTTAA 1521 0.5049 MATEDYPLLDSPSHAQPHLHAPTRHHFTSSSSSSPTTLPASDNGYHRPSFSDAADDSSGPAKSGSTVLIPNSKRASAAGISYYYNKKPKSSSGADSVPANDAAFHGGDYRKDREEWSDTAIACLLEVYTEKFKQLNRGNIRGRDWEEVAAAVGEQCGGGGGEKQYKSVEQCKNKIDNLKKRYKVELQRIGSGGITTSHWHWFKKIEAIVGNSLSLKTVSDDEKGGVGGASSSSTARQTNNRYAPSNAAMANNLKMKLASNLKWHRVLFKISGSALAGNCQNIDPKVAMQIAREVATACRLGVEVAIVVGGRNFFCGDAWVSATGLDRPTAYQIGMMATVMNSILLQSALEKLGVQARVQSAFSLPEVAEPYSRQRAIRHLEKGRVVIFGGVGAGTGNPLFTTDTAAALRASELNAEAVLKGTNVNGVFDCHLRNDNVTLDHISFREVVSRGITSMDMMALAYCEENGIPVVVFNLLEPGNVSRALCGDHVGTLIDQTGRVEHQLPS. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06965 506 FunFam Aspartate/glutamate/uridylate kinase family protein 116 184 - -
Seca8g06965 506 Gene3D - 254 502 IPR036393 -
Seca8g06965 506 MobiDBLite consensus disorder prediction 220 243 - -
Seca8g06965 506 FunFam Uridylate kinase isoform A 255 500 - -
Seca8g06965 506 Hamap Uridylate kinase [pyrH]. 261 495 IPR015963 GO:0005737|GO:0006221|GO:0033862
Seca8g06965 506 PANTHER URIDYLATE KINASE 110 500 - -
Seca8g06965 506 MobiDBLite consensus disorder prediction 226 243 - -
Seca8g06965 506 Gene3D - 116 184 - -
Seca8g06965 506 MobiDBLite consensus disorder prediction 23 44 - -
Seca8g06965 506 MobiDBLite consensus disorder prediction 1 68 - -
Seca8g06965 506 Pfam Myb/SANT-like DNA-binding domain 113 208 IPR044822 -
Seca8g06965 506 Coils Coil 168 188 - -
Seca8g06965 506 Pfam Amino acid kinase family 265 474 IPR001048 -
Seca8g06965 506 CDD AAK_UMPK-PyrH-Ec 265 495 IPR015963 GO:0005737|GO:0006221|GO:0033862
Seca8g06965 506 SUPERFAMILY Carbamate kinase-like 262 494 IPR036393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06965 Seca-Chr8 165007196 165011039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06965 106 228 Trihelix Transcription Factor Family AT3G14180 38.211 2.83e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca8g06965 AA_kinase 7.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06965 - - gmx:100791426 780.015