Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06964 ATGGACATGCCGAAACACCACGCCTCTAGAACAACGTCTCTGAGGGACGCCTCCGACTCCTCAAAGTTGGAAGGCACCGGTAGCTGGGACGCCCTCGAATGGACCAAGATTGAGCAGCCAATTCCTCGTTACGTCTCGAATGCGAATCTGGATTTCTTGCTCGAGGCGGAACAAGTTGTAGCCGAAGGACATGGTGTTGTTCTTATTAATACAGATGACGCGGGCATGTTGATGGTAACAAATTTTCGTCTTCTTTTCCTGAGTGAGGGAACTAGAAAAGTTATTGCCCTTGGAACAATACCACTAGCAACCATTGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCGAATGCTCGTCAATTAGACAAGACACCAACACAAAGACTGCTCCAGGTGATCGGAAAAGATATGAGAATTATAGTCTTTGGTTTCAGGCCTCGTACAAAACAGAGACGCGTGATATTTGATGCACTACTGAGGTGTACAAAGCAAACGAGATTATGGGATCTTTATGCTTTTGCATCTGGACCTTCTAGGTTTAAGAACACTACTCCACTGGTGCGCTTATTGGATGAGTATTTTCGACTTCTTGGCAAAGGTTCATATCGTGCATCAACCAACATGATTGAAAGTGGGTCCTTCACCTTGTCAAATGATTTATGGAGAATAAGTAGTGTGAATTCCAATTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATCATTAGTGATGATGAAGTGCTCCAGGCTTGCAGCTTCCGTGCAAGATGTCGACTGCCTGTAATTTCATGGTGTCATCCTGTTACTGGAGCAGTTCTTGCACGTTCTTCCCAACCTTTAGTTGGTCTCATGATGAATATGAGGAGCAACATGGATGAAAAACTTGTGGCTGCTCTTTGCAGCAAACTTGATGATGGATCACGGAGAAAGCTATATATAGCTGATGCGAGGCCAAGGAAAAATGCATTAGCTAATGGAGCTATGGGAGGTGGTTCAGAATCATCATCGAACTATTTTCAATCTGAGGTAGTCTTTTTTGGGATAGACAACATCCATGCAATGAGAGAGAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAGAACGTCATCTGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCGACATGGGGTGGTGGCAATTTAAGCAGTATGTCTGCTTCAGTATCAACTCTTGGGGACAGTGGATGGTTATTACATGTTCAGAGTGTCTTGGCTGGTGCAGCTTGGATTGCTGCCCGTGTTGCTATGGAAAAGGCTTCTGTTCTAGTACATTGCAGTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAGGCACTTGTTGAAAAAGACTGGTTAGCATTTGGTCATCCATTTTCTGATCGTGTAGGAGCACCATCTGTCTCTGGAAGTGGCAACACGCCTATTGAGTTGTCTAGACAGTCTTCAACTGGCAATTTCCCACCATCACCCATGCGGCAGTCATCAGGAACATTCTCATCTCAACCTCCAGCTTCATCTCATGCACATACCTCAAACAACTACTCTCCCATTTTTTTGCAGTGGGTTGATTGTGTTTCACAACTGTTGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCTTAGACTGCATGCTTTCTTGTCGGTTTGGAAACTTCTTCTGTAATAGTGAGAAGGAGAGGCTGCAATGTAACGTTTTTGAAACTTGTGGATGTTTGTGGGTATACTTGGCTGATTTGAGGACGTCAGAAGGAGGTTCCCATGTGCATTATAACCCCTTTTATGATCCACTTAAGTACAGCAGTTCTCTTCTGCCCCCAGCAGCAGCGTTAGCCCCAACTTTATGGCCCCAATTCCACCTTCGTTGGGCATGCCCAGAAGAAGCACAGGCTGGGGAGGTTGAAGCACAATGTAGGAAGATAATTATGAAATACGCTGAGATGCAGGAGGCTAAAGAAGTGGCAGAAAGGAAAGTTAAAGAAATTACTAGTGCCATGGAATCACTGAATGCAGAATTGCGACGTGAGAAGCAGCTAAACAGCTCAGCTATGAACATGGCCAAGAGGATAAGCAAAGAAAATATTGCCATAAAGCGTGCAATTCAGTCAATTGGGTGCAAGGTTCACTTCTCTAGTAGTGGTGATTGTATCGTTGACATTGAAACCAACCCTGCAGATGCAACACCAAACTTTTTGTATGGTTCCTCTAGGCAAGAATCAAATAGTGCTGCACTTGGTGACAAAAGGGATCTATCTGTTCCTGTAACAGTTACATCAGTTGATGATGATGGTGATGATGATGATAACAATGCTATTGGTCGAATATGTGAAACTCTATGCCCATTTCGCACTGGAGATGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGCCAGTTTGTTGGTCTGAAGGCAAATTTTGATGCATTTGACCAGCTATCGATTGATGATAGTTATTTCAAGTCTGAGTAA 2574 0.4398 MDMPKHHASRTTSLRDASDSSKLEGTGSWDALEWTKIEQPIPRYVSNANLDFLLEAEQVVAEGHGVVLINTDDAGMLMVTNFRLLFLSEGTRKVIALGTIPLATIEKFNKIVVKVQSNARQLDKTPTQRLLQVIGKDMRIIVFGFRPRTKQRRVIFDALLRCTKQTRLWDLYAFASGPSRFKNTTPLVRLLDEYFRLLGKGSYRASTNMIESGSFTLSNDLWRISSVNSNYTMCQSYPFALVVPKIISDDEVLQACSFRARCRLPVISWCHPVTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEVVFFGIDNIHAMRESFVRLREYMDTHGRTSSDGMSSFLRHGGSTWGGGNLSSMSASVSTLGDSGWLLHVQSVLAGAAWIAARVAMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGAPSVSGSGNTPIELSRQSSTGNFPPSPMRQSSGTFSSQPPASSHAHTSNNYSPIFLQWVDCVSQLLRMYPFAFEFSAAFLVDFLDCMLSCRFGNFFCNSEKERLQCNVFETCGCLWVYLADLRTSEGGSHVHYNPFYDPLKYSSSLLPPAAALAPTLWPQFHLRWACPEEAQAGEVEAQCRKIIMKYAEMQEAKEVAERKVKEITSAMESLNAELRREKQLNSSAMNMAKRISKENIAIKRAIQSIGCKVHFSSSGDCIVDIETNPADATPNFLYGSSRQESNSAALGDKRDLSVPVTVTSVDDDGDDDDNNAIGRICETLCPFRTGDGGCRWPNGGCAQLGSQFVGLKANFDAFDQLSIDDSYFKSE. 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06964 857 ProSitePatterns Tyrosine specific protein phosphatases active site. 439 449 IPR016130 GO:0016311|GO:0016791
Seca8g06964 857 ProSiteProfiles Myotubularin phosphatase domain. 199 651 IPR010569 -
Seca8g06964 857 SMART gram2001c 50 112 IPR004182 -
Seca8g06964 857 MobiDBLite consensus disorder prediction 491 536 - -
Seca8g06964 857 PANTHER MYOTUBULARIN-RELATED 43 756 IPR030564 -
Seca8g06964 857 Pfam Myotubularin-like phosphatase domain 172 592 IPR010569 -
Seca8g06964 857 Coils Coil 676 717 - -
Seca8g06964 857 SUPERFAMILY PH domain-like 53 175 - -
Seca8g06964 857 Gene3D - 64 163 IPR011993 -
Seca8g06964 857 MobiDBLite consensus disorder prediction 1 25 - -
Seca8g06964 857 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 215 655 IPR029021 -
Seca8g06964 857 CDD PTP-MTM-like 262 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06964 Seca-Chr8 164983647 165005289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06964 1 855 Protein tyrosine phosphatase (PTP) family AT3G10550 69.034 0.0 1178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06964 K18081 - gmx:100781842 1464.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06964 8 164983647 165005289 Seca8g06964 8 164983647 165005289 ECH