Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06951 ATGTTGGAAATGGAGAAGGATTTCGATTCCAAGCTGAAGATTCAGGGGAATTCTAACTCTTCCAATGGTGGTGGTGGGAATGTCCAGAGATCCAAGAGCTTTGCTTTTAGGGCTCCCCAGGAGAATTACACCATTCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGGTTGTAAGAGCAAAGAAGAAGGACACAGGAACTGTGTATGCATTGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACAGCTTATGTGAAGTTGGAGCGCATAGTGCTTGATCAATTGGATCATCCTGGCATTGTGAGGCTATATTTCACATTTCAAGACACATTTTCTCTGTATATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGGAAAGGTCGTCTTACTGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTGGATGCTCTTGAATACATACATAGTTTGGGAGTGATACATCGTGATATTAAGCCAGAGAACTTATTACTTACAGGTGATGGACATATTAAAATAGCTGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATCACTGTCCTTCCAAATGCAGCATCAGATGACAAGGCCTGCACATTTGTCGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGAAATGATCTCTGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCCCCTTTTAAAGATGCAAGCGAATGGCTTATTTTCCAAAGAATTATAGCAAGAGAAATTCGATTTCCAGATTACTTTTCAGAGGAATCAAGAGACCTTATTGACCGGCTATTGGACCTGGACCCTAGCAGGAGACCAGGTGCAGGACCTGATGGTTATGCTACTTTGAAAAGGCATCCCTTTTTCAAGGGGGTTGACTGGAATAACTTAAGGGCACAAATTCCTCCAAAACTTGCTCTGGAACCTGGGACTCAGTCCCCTGCAGGTGATGATGGTCAAGAGTCATCTTGGAGTCCTGCTCACATTGGGGATGGTTCTGCAGCTTCTGTTAGACAACCTGATGGCGCTACATCGTCTTCCGAGGGTACTGGTCACATAACCCGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAGTTTTTGGATCCTGGGGAATCTGTTCTTATGATCTCTATGGTGAAGAAATTACAAAAAATAACAAGCAAGAAGGTGCAGCTCATCCTCACCAACAAGCCAAAGTTGATCTATGTGGATCCATCAAAATTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATTCAAGTGACTAGTCCATCACATTTCAAGATTTGCACACCTAAAAAGGTAATGTCGTTTGAGGATGCAAAGCAAAGAGCAAATCAGTGGAAAAAGGCAATTGAAGGACTTCAAAACCGGTGA 1482 0.419 MLEMEKDFDSKLKIQGNSNSSNGGGGNVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDTFSLYMALESCEGGELFDQITRKGRLTEDEARFYAAEVVDALEYIHSLGVIHRDIKPENLLLTGDGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSEESRDLIDRLLDLDPSRRPGAGPDGYATLKRHPFFKGVDWNNLRAQIPPKLALEPGTQSPAGDDGQESSWSPAHIGDGSAASVRQPDGATSSSEGTGHITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKITSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTSPSHFKICTPKKVMSFEDAKQRANQWKKAIEGLQNR. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06951 493 Gene3D Phosphorylase Kinase; domain 1 46 131 - -
Seca8g06951 493 FunFam 3-phosphoinositide-dependent protein kinase 1 364 493 - -
Seca8g06951 493 FunFam 3-phosphoinositide-dependent protein kinase 2-like 46 131 - -
Seca8g06951 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Seca8g06951 493 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 331 - -
Seca8g06951 493 MobiDBLite consensus disorder prediction 331 376 - -
Seca8g06951 493 Gene3D Transferase(Phosphotransferase) domain 1 132 330 - -
Seca8g06951 493 Coils Coil 473 493 - -
Seca8g06951 493 FunFam 3-phosphoinositide-dependent protein kinase 2-like 132 330 - -
Seca8g06951 493 Pfam Protein kinase domain 50 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06951 493 Pfam PH domain 390 492 IPR033931 -
Seca8g06951 493 MobiDBLite consensus disorder prediction 13 29 - -
Seca8g06951 493 MobiDBLite consensus disorder prediction 1 29 - -
Seca8g06951 493 Gene3D - 367 493 IPR011993 -
Seca8g06951 493 SMART serkin_6 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06951 493 ProSiteProfiles Protein kinase domain profile. 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06951 493 CDD STKc_PDK1 46 315 IPR039046 GO:0004674
Seca8g06951 493 SUPERFAMILY PH domain-like 309 492 - -
Seca8g06951 493 SUPERFAMILY Protein kinase-like (PK-like) 45 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06951 Seca-Chr8 164722904 164733908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06951 1 493 AGC Kinase Gene Family AT3G10540 83.164 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Seca8g06951 Pkinase 1.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06951 K06276 - gmx:100801891 908.286