Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06948 ATGCTTCTTCTTATTTCCTGCATTGCTTTGCAGGACATTTCTGATGAGCTAGACCTGAAGATAAAGAAGTATCTCAGAGGTGAAGTTCCTAATTTGGAGGTTTTGAAAGATAAAAAGCTGAAGAGTCAATTAGCCGTTAGAGAAGGATTATATGGAGAATCTGCTAAAGCGGCTGCCAAGGCTGAGAAGTGGCTTATGCCTAGCGAAGGAGGTTATCTCGAGGCTGAAGGCTTGGAGAAGACATGGAGGATCAAACAGGAGTCAATAGCTCGTGAAGTAGATATCCTAAGCTCAAGGAACCAATATGATATTATTTTACCAGCACTTGGTCCATATACTATAGATTTTACTTCAAGTGGCCGGTATATGGCAATTAGTGGTCGTAAGGGCCATCTGGGAATTGTGGACATGATAAATCTGAGCCTAGTCAGAGAATTTCAGGTAAGAGAAACTGTGCGTGATGTGGTATTCTTGCACAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAGTATACATACATCTATAATCGTGAAGGCACTGAGCTTCACTGCCTCAAGGAACATGGTCCTGTGTTAAGGCTTCAGTTTCTGAAAAACCATTTTCTCTTGGCTACAATCAACAAATTAGGGCAGCTTCATTATCAGGATGTTACAACGGGTACCGTGGTTGGTAATTTTCGAACTGGCTTAGGACGTACAAACGTGATGCAAGTAAACCCCTTCAATGGGGTCGTTTCTTTAGGTCACTCAGGTGGTACAGTTACTATGTGGAAGCCAACCAGTTCTGCCCCTCTTGTCAAGATGCTATGTCATCATGGTCCTGTCTCGACAGTGGCATTTCACTCAAATGGCAACTTAATGGCCACTGCCGGGAAAGATAAAAAGATTAAGCTTTGGGACTTGAGGAAGTTTCAGGTTCTTCAAACATTACCAGGCCTTGCAAATACTTTGGATTTTAGTCAAAAAGGCGTGCTTGCTTGCGGCACTGGTTCATTTATCCAGGTTCTGAGGGATGTTTCTGGTACACAGAACTATTCTAAGTATATGACTCATTCCATGGTGAAGGGTTACCAGATAGGGAAATTAGCTTTTCGACCATATGAAGATGTTCTAGGCATAGGGCATTCAATGGGCTGGTCTAGCATTCTTATTCCAGGATCAGGAGAACCCAACTTTGATTCATGGGTTGCAAACCCATTCGAAACATCTAAACAAAGGAGAGAAAAGGAAATACGGTCTCTTCTGGATAAGCTTCCACCTGAGACAATCATGTTGGATCCCAGCAAGATTGGTACGGTGAAAACAACAAAAAAAGAGAAGCCAACAATGCAAGAGAGGGAAGCTGAGATGGAAGCTGCTGTTGAAGCTGCTAAGGGCAAAAAACTGAAGAAGAAAACAAAAGGAAGAAATAAGCCAGGTAAAATAGCACAGAAAAAGCAAGAGGCAATTGATAGAGTGAAGAGGCCTTACTTGGAGGGGAAAATTCAAGAGGAGGAAAACATATCGAGAAAGAAACAAAAAACCATTGAGGGAGTTGAACTACCAAAATCCTTACAGCGGTTTGCTCGTAAGAAACCATCATCATAA 1587 0.4216 MLLLISCIALQDISDELDLKIKKYLRGEVPNLEVLKDKKLKSQLAVREGLYGESAKAAAKAEKWLMPSEGGYLEAEGLEKTWRIKQESIAREVDILSSRNQYDIILPALGPYTIDFTSSGRYMAISGRKGHLGIVDMINLSLVREFQVRETVRDVVFLHNELFFAAAQKKYTYIYNREGTELHCLKEHGPVLRLQFLKNHFLLATINKLGQLHYQDVTTGTVVGNFRTGLGRTNVMQVNPFNGVVSLGHSGGTVTMWKPTSSAPLVKMLCHHGPVSTVAFHSNGNLMATAGKDKKIKLWDLRKFQVLQTLPGLANTLDFSQKGVLACGTGSFIQVLRDVSGTQNYSKYMTHSMVKGYQIGKLAFRPYEDVLGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETIMLDPSKIGTVKTTKKEKPTMQEREAEMEAAVEAAKGKKLKKKTKGRNKPGKIAQKKQEAIDRVKRPYLEGKIQEEENISRKKQKTIEGVELPKSLQRFARKKPSS. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06948 528 SMART WD40_4 261 300 IPR001680 GO:0005515
Seca8g06948 528 SMART WD40_4 219 258 IPR001680 GO:0005515
Seca8g06948 528 SMART WD40_4 139 176 IPR001680 GO:0005515
Seca8g06948 528 FunFam U3 small nucleolar RNA-associated protein 7 100 382 - -
Seca8g06948 528 Pfam WD domain, G-beta repeat 269 300 IPR001680 GO:0005515
Seca8g06948 528 Gene3D - 107 382 IPR015943 GO:0005515
Seca8g06948 528 PANTHER WD-REPEAT PROTEIN BING4 14 523 IPR040315 -
Seca8g06948 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 302 - -
Seca8g06948 528 Pfam BING4CT (NUC141) domain 348 426 IPR012952 -
Seca8g06948 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Seca8g06948 528 MobiDBLite consensus disorder prediction 456 482 - -
Seca8g06948 528 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Seca8g06948 528 SMART BING4CT_2 347 427 IPR012952 -
Seca8g06948 528 SUPERFAMILY WD40 repeat-like 110 376 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06948 Seca-Chr8 164679631 164687310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06948 161 340 U-box Gene Family AT1G04510 25.389 3.61e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06948 K14768 - gmx:100802940 874.774