Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06946 ATGAAGGAGGAAAAGTCTGAGACATATAGTCATAACATGACAGAAGCAATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAAGATGTTGATAAGCTTCGTAGAATCGGAGTGAAAACCATATTTTGCCTGCAACAAGATCCAGATCTAGAATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATTTACGGATGCGTCTCCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGCGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGACTTATATGTTTTGGGTTCTGGGTTATGAACTTAATGAGGCTCATACACTACTTCAGAGTAAAAGGTCGTGCTTTCCAAAACTTGATGCCATAAAAAGTGCAACCGCTGATATTCTTACAGGCCTCAGTAAGAAGCCTATCACTTTGTCATGGGGAGACAGCAATTGCTCTACAGTGGAAGTTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAGATTTTGATGACAAACGGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACACTATGAGTACAAGTACATTGTTGATGGGGAATGGATATGCAATAAGGATGAGCTTGTAACATCTCCCAACAAAGATGGCCATGTCAATAATTTTCTTGATGTCCTTGATGATACAAATGGTGTTCGAGCCTCCATTCAGGAGAGATTGACTGGTGATGATTCTGATCTTACAAAGGATGAAAGACTCAGAATAAAAGAGTTTCTTGAAGCTTGTCCTGATGAGGATCTTTGA 939 0.41 MKEEKSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDPDLEYFGVDINAIREYAKTCNDIQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALTYMFWVLGYELNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKPITLSWGDSNCSTVEVSGLDIGWGQRIPLDFDDKRGLWFLKRELPEGHYEYKYIVDGEWICNKDELVTSPNKDGHVNNFLDVLDDTNGVRASIQERLTGDDSDLTKDERLRIKEFLEACPDEDL. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06946 312 Gene3D Protein tyrosine phosphatase superfamily 23 303 IPR029021 -
Seca8g06946 312 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 185 275 - -
Seca8g06946 312 Pfam Dual specificity phosphatase, catalytic domain 73 168 IPR000340 GO:0008138|GO:0016311
Seca8g06946 312 CDD DSP_laforin-like 29 176 IPR045204 GO:0019203
Seca8g06946 312 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 23 203 - -
Seca8g06946 312 SUPERFAMILY E set domains 188 271 IPR014756 -
Seca8g06946 312 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 27 172 IPR029021 -
Seca8g06946 312 SMART dsp_5 30 180 IPR020422 GO:0006470|GO:0008138
Seca8g06946 312 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 2 310 - -
Seca8g06946 312 Pfam Glycogen recognition site of AMP-activated protein kinase 189 272 IPR032640 -
Seca8g06946 312 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 187 IPR020422 GO:0006470|GO:0008138
Seca8g06946 312 Gene3D Immunoglobulins 185 275 IPR013783 -
Seca8g06946 312 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 107 165 IPR000387 GO:0016311|GO:0016791
Seca8g06946 312 CDD E_set_AMPKbeta_like_N 189 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06946 Seca-Chr8 164646347 164655953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06946 29 312 Protein tyrosine phosphatase (PTP) family AT3G52180 69.366 4.47e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06946 - - gmx:100804010 592.038