LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g06946	ATGAAGGAGGAAAAGTCTGAGACATATAGTCATAACATGACAGAAGCAATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAAGATGTTGATAAGCTTCGTAGAATCGGAGTGAAAACCATATTTTGCCTGCAACAAGATCCAGATCTAGAATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATTTACGGATGCGTCTCCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGCGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGACTTATATGTTTTGGGTTCTGGGTTATGAACTTAATGAGGCTCATACACTACTTCAGAGTAAAAGGTCGTGCTTTCCAAAACTTGATGCCATAAAAAGTGCAACCGCTGATATTCTTACAGGCCTCAGTAAGAAGCCTATCACTTTGTCATGGGGAGACAGCAATTGCTCTACAGTGGAAGTTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAGATTTTGATGACAAACGGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACACTATGAGTACAAGTACATTGTTGATGGGGAATGGATATGCAATAAGGATGAGCTTGTAACATCTCCCAACAAAGATGGCCATGTCAATAATTTTCTTGATGTCCTTGATGATACAAATGGTGTTCGAGCCTCCATTCAGGAGAGATTGACTGGTGATGATTCTGATCTTACAAAGGATGAAAGACTCAGAATAAAAGAGTTTCTTGAAGCTTGTCCTGATGAGGATCTTTGA	939	0.41	MKEEKSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDPDLEYFGVDINAIREYAKTCNDIQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALTYMFWVLGYELNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKPITLSWGDSNCSTVEVSGLDIGWGQRIPLDFDDKRGLWFLKRELPEGHYEYKYIVDGEWICNKDELVTSPNKDGHVNNFLDVLDDTNGVRASIQERLTGDDSDLTKDERLRIKEFLEACPDEDL.	313

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g06946	312	Gene3D	Protein tyrosine phosphatase superfamily	23	303	IPR029021	-
	Seca8g06946	312	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	185	275	-	-
	Seca8g06946	312	Pfam	Dual specificity phosphatase, catalytic domain	73	168	IPR000340	GO:0008138\|GO:0016311
	Seca8g06946	312	CDD	DSP_laforin-like	29	176	IPR045204	GO:0019203
	Seca8g06946	312	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	23	203	-	-
	Seca8g06946	312	SUPERFAMILY	E set domains	188	271	IPR014756	-
	Seca8g06946	312	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	27	172	IPR029021	-
	Seca8g06946	312	SMART	dsp_5	30	180	IPR020422	GO:0006470\|GO:0008138
	Seca8g06946	312	PANTHER	DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN	2	310	-	-
	Seca8g06946	312	Pfam	Glycogen recognition site of AMP-activated protein kinase	189	272	IPR032640	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g06946	Seca-Chr8	164646347	164655953	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g06946	29	312	Protein tyrosine phosphatase (PTP) family	AT3G52180	69.366	4.47e-152	426

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g06946	-		-	gmx:100804010	592.038

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