Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06923 ATGATTCTCCCCTTTTCAATGGCATTGAGACCTTCATCTTTCGTGATCTTGCTGGCATATGGTGCGCTGCTAGTTGTGGCCTCATTGACACCATGCTGGTATGTCATAGTCACACATATCGAGAAACGTGTGAATTTGAATTCAGAAAATATTGTGTCTCAATTGCAATCAGAAATTCAGTACTCAGCTCAACTGTTACACCCAATGGAATCATCATCAACCAATTTAGCAAAATTATTGAGTTCATCCCTTGATTCTACTAATAATATCTCTTTCTCTTATATTGACACCAAGGTGGCTCCGTTATTATTTCAAGCATTTGTCACAATTCCTCACTTAACCCAAATCTCATACATGGGGATGGAAGGTCTTTTTTTCTCATACTACAATGATGATCATGATCAAGTTCTAGCAATGTACTCAAATAAAACCTTATACTATATCCAGCCTGTGAATAGTGAAACTGGAAAGGTTTATGGGGAAGCCATAATATCTAATAACACCTCTATCAATGCAAGTCTTTCAAATGGGTTTGCCTCATTGGGAAGCAATGGCAAAGATCTTTTGTTTCTGAGTTCAACTAGAATTACAAGAAATAGAGGAGTGATCTCTCTTGGGTATTCAGCAAAAGCAATAACTGATTTTATGACCCTTCAAGGCACAAGCTCATCATTGTATTTGGCTACCAAAGATGGAAAAGTAGTTATTGTACAAGGAGGGATTCAACATATAAGGTTGCTCATTTCTAATGATACGGTTTCCTTCCAATCAGTGAATGCAAAGGGTGATCCCATAAGGAATGAGGGCTCTGTTTCATGCAGGGATGATGCCAATTTTGGTTCTACCTTGAAGATTCAGGATACTGAATATTTAATTCACTGCCACCCCATTGATATAATGGGAATTGAATCGGTGTATGTTTTGGCTGTACCACAAAATGGATTTGTCAACTTTGATCTAAATTATTATAAGAAAAAGGCATTGGCATTTTTTATTGTCATGATGGTCATGATATTTATTGCAATATTCAGCTTTCTATTAATAAATGCAAAAGCCACAAGGCGAGAAATGCATTTGTGTGCCTCACTCATCAAACAGATGGAAGCCACCCAACAATCTGAGCGAAAGAATATGAACAAGAGCCTTGCTTTTGCTAGTGCCAGCCATGATCTTCGTACTTCTCTTGCAGGCCTCACTGGTTTGATTGAATTGTCCTGTAAATTAGTTAAGGCAGGTTCAAGATTAGAGACTAATTTAAAACAAATGGAGGATTGTACCCATGACTTACTAGGACTACTGAACTCTATACTTGACACAAGCAAAATTGAGTCAGGGAAAATGCAACTTGAGGAAGAAGAATTTGATGTGTCCCATCTCCTGGAAGGTGTAGTTGATTTCTACCATCCAGAGGCCATGAAGAAAGGTGTAGATCTTGTGTTGGACCCTTGTAATGGTTCTGTTATCAAATATTCACGCGTGAAAGGTGATAGGGGAAAGCTTAAACAAGTTTTGTGTAATTTACTGAACAATGCTGTCAAATTTACTAGTGAAGGGCACATAACAGTTCGGGCATGGGCTCAGAAGCCAACTTTACAGAGCTCAATAATCAAGACTAACCAGTATAGTTTCATGAAATGTTTATCATGCTTACTTTATAAGAAAAATGAAACACATGATGATCTAGAAAAAGCCATGAATTCAATCCAGCAAGACCCAAATTGTACGGATTTTATATTTGAAGTGGATGATACAGGAAAAGGAATTCCCAAAGAGAATTACAAGTCTGTGTTTGAGAATTATGTTCAAGTCAAAGAAACTGCTCTTGGACAAGGAGGAACCGGCTTGGGACTTGGGATTGTGCAGTCTTTGGTGCGTTTGATGCATGGAGATATTGGAATTGTGGACAAGGATATTGGCAAAAAAGGAACATGCTTCAGGTTCAATGTGCTCCTCACATTATGTGAGAGTGAGACAGTGACAGAATGTAGCACAAGGGAATGTCTTGAGTATGGATCAGGTGATGACAGGAACCAAACTCGGGGGAGAATTAACATTCACACTACTAGTTCTGGTTCAAGCATTTGTTCCATGAGTCCAAGGTTACATATTTGCAGCTCTAGTCCTAGACCTGAGGCTTCCCATGTTGTTCTTTTGATTGGAAACAAGGAGAGGAGAAGGATTTCTCAAAGGTTCATGGAGAGCTTAGGGATTAAAGTTAAAGCTGTGAAGTCTTGGAAACATCTCTTTTATACTCTTGAGAAGTTCAGACTGAAGGGTCACTATTCTGGTAGCCAGAGTTCTCCAGAGTCTTCCAATTTGAGTTCTCAAAATTATTCTTTTGCTAAAGTCAGAGGAGTTCCTTTGAGTGCTATGGATGGAAATGGAATTGAGTATATACCACCTTCAGTGTTAAAGAAGACAGATATTGGAGCTGCCCCAGGTTTCATCCTGATTATCATTGATGTAAATGAAGAAACATTTTCTGAACTTCATAGGATTGTATCCAAATTCAAGAAAAGCCTTGCCAACCCTTGTAAGGTTGTTTGGTTGGATAAGTCACTTATGCTTAGTGTAAACTCAGAAACAGTTGATCAAGATGACATAGTCATATCTAAACCTTTTCATGGTAGTCAATTGTTCCAAGTTATAAAGCTTCTTCCTGAGTATGGTGGTACTTGGCAAACAAGTTCTAGTAAAGCTATGAGAGGAATTTCTCATGATAGAGCAAGAAAGAGTAGTAGTAGTAGGGATTCAAGCTTATCAAAATACCAGTCCCCTAAGATGATATTGGACAGATCACAAGTATCCCCAAGTGATGAAACCCCATGTGGAGGAGACTCAAGCTGTCACAAACCCTTAAGAGGCAAGAAATTTTTGGTTGTTGAGGACTCTCAAATTTTAAGAAGGATAGCTCTGGCTAAATTGATTCAACTTGGTGCAATTGTTGAGCAATGTGAGAATGGTAAACAGGCTGTGCAGCTTGTTGATAAGGGTCTAATCAGGGATTATCCTAATCCTCCTTATGATTACATCTTAATGGACTGCAAGTCGGCTGGCCTTCCAGCCTTCCTAAATCCTAAACGGTTGGAAGATCAGCCGACCAGGAAGGCTAGTCGACCAGAAAGGACAAAAGACCGAGAAGGTCAGCCGACCTGGAAGATGCCAGAGATGGATGGGTTTGAGGCAACAAGGCGGATACGAGAGATTGAGAAGGCCCACAAAAATGGAGTCCGTATTCCTATCATTGCATTAACTGCTGACGAAATGATGACAGTGACTGCAATGGACTATCATATAGTAAAGCCCATTGACACAGAGAAATTACTTAGAGCCATCAAATGCATACACACACAAAGGATTTGA 3363 0.3931 MILPFSMALRPSSFVILLAYGALLVVASLTPCWYVIVTHIEKRVNLNSENIVSQLQSEIQYSAQLLHPMESSSTNLAKLLSSSLDSTNNISFSYIDTKVAPLLFQAFVTIPHLTQISYMGMEGLFFSYYNDDHDQVLAMYSNKTLYYIQPVNSETGKVYGEAIISNNTSINASLSNGFASLGSNGKDLLFLSSTRITRNRGVISLGYSAKAITDFMTLQGTSSSLYLATKDGKVVIVQGGIQHIRLLISNDTVSFQSVNAKGDPIRNEGSVSCRDDANFGSTLKIQDTEYLIHCHPIDIMGIESVYVLAVPQNGFVNFDLNYYKKKALAFFIVMMVMIFIAIFSFLLINAKATRREMHLCASLIKQMEATQQSERKNMNKSLAFASASHDLRTSLAGLTGLIELSCKLVKAGSRLETNLKQMEDCTHDLLGLLNSILDTSKIESGKMQLEEEEFDVSHLLEGVVDFYHPEAMKKGVDLVLDPCNGSVIKYSRVKGDRGKLKQVLCNLLNNAVKFTSEGHITVRAWAQKPTLQSSIIKTNQYSFMKCLSCLLYKKNETHDDLEKAMNSIQQDPNCTDFIFEVDDTGKGIPKENYKSVFENYVQVKETALGQGGTGLGLGIVQSLVRLMHGDIGIVDKDIGKKGTCFRFNVLLTLCESETVTECSTRECLEYGSGDDRNQTRGRINIHTTSSGSSICSMSPRLHICSSSPRPEASHVVLLIGNKERRRISQRFMESLGIKVKAVKSWKHLFYTLEKFRLKGHYSGSQSSPESSNLSSQNYSFAKVRGVPLSAMDGNGIEYIPPSVLKKTDIGAAPGFILIIIDVNEETFSELHRIVSKFKKSLANPCKVVWLDKSLMLSVNSETVDQDDIVISKPFHGSQLFQVIKLLPEYGGTWQTSSSKAMRGISHDRARKSSSSRDSSLSKYQSPKMILDRSQVSPSDETPCGGDSSCHKPLRGKKFLVVEDSQILRRIALAKLIQLGAIVEQCENGKQAVQLVDKGLIRDYPNPPYDYILMDCKSAGLPAFLNPKRLEDQPTRKASRPERTKDREGQPTWKMPEMDGFEATRRIREIEKAHKNGVRIPIIALTADEMMTVTAMDYHIVKPIDTEKLLRAIKCIHTQRI. 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06923 1120 CDD HisKA 377 441 IPR003661 GO:0000155|GO:0007165
Seca8g06923 1120 Pfam His Kinase A (phospho-acceptor) domain 382 445 IPR003661 GO:0000155|GO:0007165
Seca8g06923 1120 Gene3D - 945 1118 - -
Seca8g06923 1120 Gene3D - 447 657 IPR036890 -
Seca8g06923 1120 SUPERFAMILY CheY-like 953 1018 IPR011006 -
Seca8g06923 1120 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 649 IPR036890 -
Seca8g06923 1120 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155|GO:0007165
Seca8g06923 1120 Gene3D - 366 446 - -
Seca8g06923 1120 ProSiteProfiles Response regulatory domain profile. 957 1116 IPR001789 GO:0000160
Seca8g06923 1120 MobiDBLite consensus disorder prediction 1026 1055 - -
Seca8g06923 1120 CDD REC_hyHK_CKI1_RcsC-like 958 1112 - -
Seca8g06923 1120 MobiDBLite consensus disorder prediction 1029 1055 - -
Seca8g06923 1120 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 651 IPR003594 -
Seca8g06923 1120 ProSiteProfiles Histidine kinase domain profile. 386 653 IPR005467 -
Seca8g06923 1120 SMART HKATPase_4 495 653 IPR003594 -
Seca8g06923 1120 PANTHER TWO-COMPONENT HISTIDINE KINASE 1054 1113 - -
Seca8g06923 1120 SMART HisKA_10 379 445 IPR003661 GO:0000155|GO:0007165
Seca8g06923 1120 SMART REC_2 956 1112 IPR001789 GO:0000160
Seca8g06923 1120 SUPERFAMILY CheY-like 1053 1115 IPR011006 -
Seca8g06923 1120 PRINTS Bacterial sensor protein C-terminal signature 577 591 IPR004358 GO:0016310|GO:0016772
Seca8g06923 1120 PRINTS Bacterial sensor protein C-terminal signature 595 605 IPR004358 GO:0016310|GO:0016772
Seca8g06923 1120 PRINTS Bacterial sensor protein C-terminal signature 611 629 IPR004358 GO:0016310|GO:0016772
Seca8g06923 1120 MobiDBLite consensus disorder prediction 895 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06923 Seca-Chr8 164396012 164402169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06923 7 1119 Histidine Kinase Gene Family AT2G47430 37.890 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g06923 HATPase_c 2.8e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06923 - - cam:101504256 1256.12