Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06917 ATGACAGATTTTCAGCCGCTACAGCAGAAGCCTGAACCTGCTGATGCCCACGCCGAGTTTGAGCGTGGACTGGAGGAGTTTATGCGTGGCCACTTGGATGATTGTATGTCATTTGCTTCGTGTAGCTCCTCCCGCGCACCGGAGGATGAAGATGATGAGGCTGATCAGCTGGTTCGGAGGAGACGGCGGTCTGATCTTGAAGGGGATGATTTAGCAGAGTCATCAGCTGCGAGAAGGCGCCATTCACGGATTTTGAGCAGATGGGCTGCCCGGCAAGCGCAGGAGATGATAACTACCATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCACTTGCAGGATTACATACTGTATCCATGTTGGACTCCTCTTTTCTGAGGGGATCACAGTCTCCGACTTCTGGCCAGGAGGGAGCTGCGGAGAGGCCAAGCACTCAGGCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATTTATTGAATCGAGCACGTGAAAGGATGAGGGAAAGGTTGCGGCAGCAAAGGAGCTCTGACTCTAATACCAATGTGTCCAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCGCATGATCAGATTGGATCACGGAATGCTCATGGGAATCACAATGGGTCTAGCAGGGAGCAATCTCCTGATCTCGGCGAAGTTGAGAGGGAGAGGGTAAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAACCGTAGAGCAGAATGGCTCGGAGAAACTGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGGTCACGTGGGAGCCGGAGGGATGCTCCAGTAAGTGAATCTGCTCAAGTTGACCGAGCCCGTGATGCAGTAACTGATCACGATGAGGGTCAGCCAGAGCATGTTCGGCGTGACTTGTTGAGGTTGCGTGGAAGGCAGGCTCTAGTTGATCTGCTTGTGAGAATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCTCCGTCTATGGCTGCAAATGAATTAGTTCAGTTGAGACAACGACACACAGTCTCTGGTTTGAGGGAGGGGTTTCGTTCAAGATTAGAAACTATTGTTCGTGGTCAAGCAGGCACCAATCCTGATGCCACTTCTAATAGTAACATTAATGAAACAAGAAGCAACGAGGACCAAGCAAACAATCAGATAGATGGCCAGCAAGAAAACTATGAACAACAGCAGATTAGGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATCAAACAGGAACTGTGGAGAGTAGCACAAGTGAGACTATTAATTGGCAAGATGCTAGTAATCAAGGAGGGAATTGGCAGGAACAAATTGCTGAAGATGGGGGAGGAAACTGGCAACAGAGAACTTATGGCCCATTCAATCAGCTAAGAGATGGAAGGGCAGTCAGTGATTGGCCACAGGAAACTCCCAGAAATATATCTGGGGAAGATCCTCATCCACGGGAAGTTCAAAGAGTTTGGCATGAGGATAGCACGAGGGAAGCTGTTGGTAATTGGTCTGAAGGATCATCTGGAGCTTCAAGAAATCGCCGTGGTGTTCCTTTTAGAAGATTCAATAGATTTCATCCACCTGACGATGATAATGTATACAGCATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTACTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAACTAATACAGTCTTATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTACATCGGAACTTGCCAACACCAACTCCTGCCTCACCTGAACGCGACCCTGATCAGCAGGGTGATGAACGTAATGAGGGTCAGCATGAAGCAATTAACAGACCTTCACTGGTCTTGCCTTCTCCACCAGTACCTCCGCCACAACCACTGTGGCACCAAGATTTGCATCAAACTGGATGGTCTCGTCATAGCATGCACCGATCTGAAATCGAGTGGGAGATAATGAATGACTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGAATGCTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGTTCTGTCAGGCAGGAGGTCTCTGCAGCTCTGAACCGCTCAGCTGGTGAAAATGGATTGGGTGCTGAGACTTCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCGCTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCCAATGAGTTAGTTCGTGGCGGGGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2559 0.483 MTDFQPLQQKPEPADAHAEFERGLEEFMRGHLDDCMSFASCSSSRAPEDEDDEADQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAAERPSTQASAILQMWRELEDEHLLNRARERMRERLRQQRSSDSNTNVSSTMSDSRGSENQGSLGDASESENDYGTWSHDQIGSRNAHGNHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAPVSESAQVDRARDAVTDHDEGQPEHVRRDLLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAANELVQLRQRHTVSGLREGFRSRLETIVRGQAGTNPDATSNSNINETRSNEDQANNQIDGQQENYEQQQIRSLETDVRQLPNQTGTVESSTSETINWQDASNQGGNWQEQIAEDGGGNWQQRTYGPFNQLRDGRAVSDWPQETPRNISGEDPHPREVQRVWHEDSTREAVGNWSEGSSGASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQGDERNEGQHEAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL. 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06917 852 MobiDBLite consensus disorder prediction 653 682 - -
Seca8g06917 852 Coils Coil 729 749 - -
Seca8g06917 852 Coils Coil 450 477 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 40 78 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g06917 852 CDD mRING-HC-C3HC5_NEU1 797 849 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 172 244 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 543 591 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 125 146 - -
Seca8g06917 852 SUPERFAMILY RING/U-box 799 845 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 296 334 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 554 575 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 434 461 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 313 334 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 52 78 - -
Seca8g06917 852 ProSiteProfiles Zinc finger RING-type profile. 800 839 IPR001841 -
Seca8g06917 852 MobiDBLite consensus disorder prediction 483 508 - -
Seca8g06917 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 850 IPR013083 -
Seca8g06917 852 Pfam Zinc finger, C3HC4 type (RING finger) 797 844 - -
Seca8g06917 852 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 852 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 433 461 - -
Seca8g06917 852 MobiDBLite consensus disorder prediction 179 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06917 Seca-Chr8 164354749 164361955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06917 782 846 C3H Transcription Factor Family AT3G06140 37.879 1.33e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06917 - - gmx:100805607 1509.58