Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06909 ATGTCAGGAGAGGAAATTTGGTCATCAGCTGAAGAAGAATCTAGTGAATCTCTGCCTCCATTTGATAACAGGAATGGCTACAATTCAAGAACAGGCATTTATCACTCTCTTGTTAGGCTTGGAACCAAGCATGAAATCCCAACAAAGCCTGATCTTAACACTGCCAGTCTTGTGCTATCACAGTTCCCACATGCAGACCTTGCTGAGGCAAAAATTGCATTCATTGATTCAAGTACTAATCAGATAGTAAGCTATGGTGAGCTTCGCAGGTCTATTTACTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGATTAGGAAAGGGGATGTTGTGTTTGTATTGTCCCCAAACTCAATCTTATACTCAACCATATGCATAGCTGTGTTATCAGTAGGAGCAATTCTAACCACTGCCAATCCACTCAATACTGAGTCAGAAATTGCCAAACAAGTGTGTGATTCAGGTGCTAAACTAGCCATCTCAGCACCAGAGGAGCTACACAAATTAGTCCCAACTGGGGTGCCTACAATTCTCACCTCTCGTCCATCTGATGGGAATTTGTTGTCAGTTGAAGAGTTAATAGAAGGCTGCTATAATTCACAAGAGTTGCCACATGTTCCTGTGGCACAATCAGACACTGCTGCTATACTTTACTCTTCAGGGACTACTGGGGTAAGCAAAGGTGTAGTTTTGACACATGCAAATCTCATTGCCATAATGAAACTACTCTTCTGGTCTGCTGATGTATCTGCATCCCAAGATGATGTTTTCTTGGCATTCATTCCAATGTTTCACATATATGGATTGGTGTTCTTTGGATTGGGGTTGTTGTGTGTTGGTGTTACAACAATTTTGATGCAGAAATTTGACTTCCAAGCTATGCTTGTTGCTATTCACAAGCACAAAGTTAACAACTTACCAGCAGTTCCACCAGTGATCCATGCATTGGTAAAATATGCAAGCAAAACTGGGTTTGACTTGTCCAGTCTAAGAAAGGTGGGGTCAGGGGCTGCACCTTTGAGTAAGGAAGTGGCACAGGAGTTTAGAAAGAAGTTTCCTTGGGTTGAACTAAGGCAAGGTTATGGACTAACAGAGAGTTGTGGCGCAGCAACATTTTTTGTGTCAGATAAAGATGCTAAAGCTCATCCAGACTCATGTGGGAAGCTGATTCCAACATTTTGTGCAAAAGTGGTAGACATTGAAACAGGAAATCCTTTGCCTCCTCACAAGGAAGGAGAGTTATGGCTGAAAAGTCCTACTATTATGAAAGGATATCTAGGAAATTTTGAGGCAACAACTGCAACAATTGATCCAGAAGGTTGGTTGAGGACAGGTGATCTTGGTTATATTGATGACAATGGATTTGTTCATGTAGTTGAACGGATAAAGGAGCTAATCAAGCATAAAGGGTATCAGGTGGCTCCGGCAGAATTGGAATCTCTACTGCTAAGTCATCCCCATATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAAATACCAATGGCATATGTGGTGAGAGCAGCTGGCTCTGAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCTGACCAGGTCACTCTTAGCTTATGGTCATTTTAA 1614 0.4195 MSGEEIWSSAEEESSESLPPFDNRNGYNSRTGIYHSLVRLGTKHEIPTKPDLNTASLVLSQFPHADLAEAKIAFIDSSTNQIVSYGELRRSIYSLASALFHGLEIRKGDVVFVLSPNSILYSTICIAVLSVGAILTTANPLNTESEIAKQVCDSGAKLAISAPEELHKLVPTGVPTILTSRPSDGNLLSVEELIEGCYNSQELPHVPVAQSDTAAILYSSGTTGVSKGVVLTHANLIAIMKLLFWSADVSASQDDVFLAFIPMFHIYGLVFFGLGLLCVGVTTILMQKFDFQAMLVAIHKHKVNNLPAVPPVIHALVKYASKTGFDLSSLRKVGSGAAPLSKEVAQEFRKKFPWVELRQGYGLTESCGAATFFVSDKDAKAHPDSCGKLIPTFCAKVVDIETGNPLPPHKEGELWLKSPTIMKGYLGNFEATTATIDPEGWLRTGDLGYIDDNGFVHVVERIKELIKHKGYQVAPAELESLLLSHPHIVDAAVIPVEDEETGQIPMAYVVRAAGSELSEDQVIQFVADQVTLSLWSF. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06909 537 SUPERFAMILY Acetyl-CoA synthetase-like 64 530 - -
Seca8g06909 537 Gene3D - 42 463 IPR042099 -
Seca8g06909 537 Gene3D - 464 534 IPR045851 -
Seca8g06909 537 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Seca8g06909 537 FunFam Long-chain-fatty-acid--CoA ligase FadD 43 463 - -
Seca8g06909 537 CDD 4CL 46 530 - -
Seca8g06909 537 Pfam AMP-binding enzyme C-terminal domain 477 529 IPR025110 -
Seca8g06909 537 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 29 531 - -
Seca8g06909 537 MobiDBLite consensus disorder prediction 1 24 - -
Seca8g06909 537 Pfam AMP-binding enzyme 70 467 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06909 Seca-Chr8 164257291 164259931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06909 22 530 Monolignol Biosynthesis Gene Families AT1G20500 43.353 1.18e-138 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06909 K10526 - gmx:100796728 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06909 8 164257291 164259931 Seca8g06909 8 164257291 164259931 ECH