Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06905 ATGGGTCGCGAAACTATTTTCCTTCCAGCTCCACCAACCTCATCCACCACTACTGTGAACCCACCACCAGCAACTGTGGCAGTAGCAGCTCCATCAGCATCAGCATCAGCAGCAGCAGCAGCTCCACCTACCTCCCTTGCTCCTGGGTTCAGGTTCCACCCAACTGATGAAGAGCTTGTTATTTATTACCTCAAGCGCAAGGTTTGTGGGAAAAGCTTCCGATTTGATGCCATATCTGAGGTTGACATATACAGGAGCGAGCCTTGGGACCTAGCAGATAAATCAAGGTTGAAGACCAGAGACCAAGAATGGTATTTTTTCAGTGCATTGGACAAAAAATATGGTAATGGTGGCAGAATGAACAGGGCTACAAGCAAAGGGTACTGGAAAGCCACTGGAAATGATCGCCCGGTTAGGCATGAACAAAGAACTGTGGGTTTGAAAAAAACCTTGGTGTTTCACAGTGGTCGTGCTCCAGATGGTAAGAGAACAAATTGGGTCATGCATGAGTACAGGCTTGTTGATGAAGAGCTGGAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGGATGCATATGTCTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGGTATGCACCTTTCGTTGAAGAAGAGTGGGATGATGCATCGGGAATGGTTCCTGGGGCGGAGCCTGTGGATAACGGTTCTGTTGCTCACTGTGCACGTGTTGAAGGCAATGGTGGCGGTTTGTGCATTGAAGGGAGAAATGGTGTTGTACAGAAACTCAAAATCTTCTAG 798 0.4787 MGRETIFLPAPPTSSTTTVNPPPATVAVAAPSASASAAAAAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVRHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERAGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASGMVPGAEPVDNGSVAHCARVEGNGGGLCIEGRNGVVQKLKIF. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06905 265 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g06905 265 SUPERFAMILY NAC domain 38 201 IPR036093 GO:0003677|GO:0006355
Seca8g06905 265 Gene3D NAC domain 55 203 IPR036093 GO:0003677|GO:0006355
Seca8g06905 265 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 45 209 - -
Seca8g06905 265 FunFam Nac domain-containing protein 86 55 203 - -
Seca8g06905 265 ProSiteProfiles NAC domain profile. 46 200 IPR003441 GO:0003677|GO:0006355
Seca8g06905 265 Pfam No apical meristem (NAM) protein 48 173 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06905 Seca-Chr8 164171191 164179103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06905 1 230 NAC Transcription Factor Family AT3G10480 59.470 1.63e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g06905 NAM 1.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06905 - - gmx:100808783 438.728