Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06901 ATGGAAGCACCAGATGAACTCTCTTTGGGGTCCAAAGAGCACACCAACATTGTCAAAGGGAAAAGAACCAAAAGGGTAAGGCCTCAATCCCCAATTCCCTTCTCCATCACTGCTAATTCTTCAACCGATGATAATAACAATAACAACAGCTCCCCCACCACTTCTTCTGCAGGATTACAAGACAGCACTGAAGAAGAAGAGGATATGGCAAATTGCTTGATCCTTTTGGCTCAAGGACAATCCAAGGAATCCCCTAAACACACTGAGGAAGATGGAGGCATGAACTACACCAAGTATAGCAGTAGAAAATTCTTGGAAGCTGCAGCCTTGGGTTCTGGTAGTGGAAGGGCAGGGTACTATGTGTATGAATGCAAGACATGTAACAGAACATTCCCTTCATTTCAAGCACTTGGAGGACACAGGGCTAGTCATAAGAAGCCTAAGGCCATGGCTGCAATGGCTATTGGTCAAGAGAAAAAGCAACCTTTTTTGTCATCAGATGAGGAAGAGTTTCAATTCAAGACCAATAAATCATCACTTAACCTTCAATTGAATAGCAGGGGAAATTTGTATAGCAATAACAACAAGTCTAAGGTTCATGAGTGCTCTATTTGTGGTGCTGAATTCACATCAGGACAAGCACTTGGTGGCCATATGAGGCGCCACAGGGCACCGGTAGGGACCAACACCACACTTTCCTTGACCCCAATGGCCTTGGAACCTGAAGAAGATCAACCCAGAAAAAAAAGAAATGTCTTGTCTTTGGATTTGGATCTCAACCTTCCTGCACCAGAAGATGATCAAAGAGAATCTAAGTTTGCCTTTGCATCCAAGCAACAACAACATGGCCAAAAACAACAACAGCAACAGCAGCAGCAACAACAAACAAGTCTTGTCTTCTCCGCCCCAGCTTTGGTGGATTGTCATTACTGA 933 0.4405 MEAPDELSLGSKEHTNIVKGKRTKRVRPQSPIPFSITANSSTDDNNNNNSSPTTSSAGLQDSTEEEEDMANCLILLAQGQSKESPKHTEEDGGMNYTKYSSRKFLEAAALGSGSGRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAMAAMAIGQEKKQPFLSSDEEEFQFKTNKSSLNLQLNSRGNLYSNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPMALEPEEDQPRKKRNVLSLDLDLNLPAPEDDQRESKFAFASKQQQHGQKQQQQQQQQQQTSLVFSAPALVDCHY. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06901 310 MobiDBLite consensus disorder prediction 274 295 - -
Seca8g06901 310 MobiDBLite consensus disorder prediction 260 295 - -
Seca8g06901 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Seca8g06901 310 MobiDBLite consensus disorder prediction 214 248 - -
Seca8g06901 310 Gene3D Classic Zinc Finger 120 222 - -
Seca8g06901 310 PANTHER ZINC FINGER PROTEIN ZAT5 50 286 - -
Seca8g06901 310 MobiDBLite consensus disorder prediction 1 68 - -
Seca8g06901 310 SMART c2h2final6 200 222 IPR013087 -
Seca8g06901 310 SMART c2h2final6 122 144 IPR013087 -
Seca8g06901 310 SUPERFAMILY beta-beta-alpha zinc fingers 121 222 IPR036236 -
Seca8g06901 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 222 IPR013087 -
Seca8g06901 310 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Seca8g06901 310 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Seca8g06901 310 MobiDBLite consensus disorder prediction 30 60 - -
Seca8g06901 310 Pfam C2H2-type zinc finger 199 225 - -
Seca8g06901 310 Pfam C2H2-type zinc finger 121 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06901 Seca-Chr8 164129399 164130385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06901 1 310 C2H2 Transcription Factor Family AT5G04390 45.676 1.68e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g06901 zf-C2H2_6 5.9e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06901 - - gmx:100799383 452.981