Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g06901 | ATGGAAGCACCAGATGAACTCTCTTTGGGGTCCAAAGAGCACACCAACATTGTCAAAGGGAAAAGAACCAAAAGGGTAAGGCCTCAATCCCCAATTCCCTTCTCCATCACTGCTAATTCTTCAACCGATGATAATAACAATAACAACAGCTCCCCCACCACTTCTTCTGCAGGATTACAAGACAGCACTGAAGAAGAAGAGGATATGGCAAATTGCTTGATCCTTTTGGCTCAAGGACAATCCAAGGAATCCCCTAAACACACTGAGGAAGATGGAGGCATGAACTACACCAAGTATAGCAGTAGAAAATTCTTGGAAGCTGCAGCCTTGGGTTCTGGTAGTGGAAGGGCAGGGTACTATGTGTATGAATGCAAGACATGTAACAGAACATTCCCTTCATTTCAAGCACTTGGAGGACACAGGGCTAGTCATAAGAAGCCTAAGGCCATGGCTGCAATGGCTATTGGTCAAGAGAAAAAGCAACCTTTTTTGTCATCAGATGAGGAAGAGTTTCAATTCAAGACCAATAAATCATCACTTAACCTTCAATTGAATAGCAGGGGAAATTTGTATAGCAATAACAACAAGTCTAAGGTTCATGAGTGCTCTATTTGTGGTGCTGAATTCACATCAGGACAAGCACTTGGTGGCCATATGAGGCGCCACAGGGCACCGGTAGGGACCAACACCACACTTTCCTTGACCCCAATGGCCTTGGAACCTGAAGAAGATCAACCCAGAAAAAAAAGAAATGTCTTGTCTTTGGATTTGGATCTCAACCTTCCTGCACCAGAAGATGATCAAAGAGAATCTAAGTTTGCCTTTGCATCCAAGCAACAACAACATGGCCAAAAACAACAACAGCAACAGCAGCAGCAACAACAAACAAGTCTTGTCTTCTCCGCCCCAGCTTTGGTGGATTGTCATTACTGA | 933 | 0.4405 | MEAPDELSLGSKEHTNIVKGKRTKRVRPQSPIPFSITANSSTDDNNNNNSSPTTSSAGLQDSTEEEEDMANCLILLAQGQSKESPKHTEEDGGMNYTKYSSRKFLEAAALGSGSGRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAMAAMAIGQEKKQPFLSSDEEEFQFKTNKSSLNLQLNSRGNLYSNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPMALEPEEDQPRKKRNVLSLDLDLNLPAPEDDQRESKFAFASKQQQHGQKQQQQQQQQQQTSLVFSAPALVDCHY. | 311 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g06901 | 310 | MobiDBLite | consensus disorder prediction | 274 | 295 | - | - | |
Seca8g06901 | 310 | MobiDBLite | consensus disorder prediction | 260 | 295 | - | - | |
Seca8g06901 | 310 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 122 | 149 | IPR013087 | - | |
Seca8g06901 | 310 | MobiDBLite | consensus disorder prediction | 214 | 248 | - | - | |
Seca8g06901 | 310 | Gene3D | Classic Zinc Finger | 120 | 222 | - | - | |
Seca8g06901 | 310 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 50 | 286 | - | - | |
Seca8g06901 | 310 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Seca8g06901 | 310 | SMART | c2h2final6 | 200 | 222 | IPR013087 | - | |
Seca8g06901 | 310 | SMART | c2h2final6 | 122 | 144 | IPR013087 | - | |
Seca8g06901 | 310 | SUPERFAMILY | beta-beta-alpha zinc fingers | 121 | 222 | IPR036236 | - | |
Seca8g06901 | 310 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 200 | 222 | IPR013087 | - | |
Seca8g06901 | 310 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 124 | 144 | IPR013087 | - | |
Seca8g06901 | 310 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 202 | 222 | IPR013087 | - | |
Seca8g06901 | 310 | MobiDBLite | consensus disorder prediction | 30 | 60 | - | - | |
Seca8g06901 | 310 | Pfam | C2H2-type zinc finger | 199 | 225 | - | - | |
Seca8g06901 | 310 | Pfam | C2H2-type zinc finger | 121 | 147 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g06901 | Seca-Chr8 | 164129399 | 164130385 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g06901 | 1 | 310 | C2H2 Transcription Factor Family | AT5G04390 | 45.676 | 1.68e-87 | 265 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca8g06901 | zf-C2H2_6 | 5.9e-13 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g06901 | - | - | gmx:100799383 | 452.981 |