LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g06875	ATGTTTAATAAGTTCAATGGTACCCTCCCACCAAATCTTTGTTTTGGAAAGCAATTAGTCAAGCTGAATATGGGTGGCAATCAATTTCATGGTAGCATACCTTCTGATGTAGGAAGATGTACAACTCTTACAAGGGTAAGACTTGAAGACAATAATTTTACTGGTCCTCTTCCTGATTTTGAAACCAATCCAAATGTCTTGTACATGAGTGTCAGCAACAATAAAATCAGTGGAGCAATTCCATCAAGTTTGGGAAACTGCACAAATCTCTCCTTTTTAGATTTGTCCATGAACAGCTTTACAGGTATTGTACCCTCAGAGCTAGGAAACCTTGTGAATCTCCAGACTTTGGATCTCTCTCTCAATAAATTGGAAGGTCCTTTGCCACATCAGCTGTCAAACTGTACCAAAATGAACAGGTTTGATGTGGGATTCAATTTCCTGAATGGCACATTTCCATCAAGTTTGCAGAGCTGGACTACATTAACCACTTTAATTCTCAGAGAGAATCATTTTAGTGGGGGTATCCCAGCTTTCTTGTCGGAATTTCAAGCGCTTATTGAACTACAGCTTGGTGGAAATATGTTTGGAGGGACAATTCCCAGATCAATTGGAAAATTGCAGAATTTGTTATATGGGTTAAATCTAAGTGCTAATGGGCTGATAGGTGAGCTTCCTGAGGAGATTGGAAACCTGAAGAGTTTGCTAAAACTGGATCTATCTTGGAACAATTTGACAGGAAGCATACAAGTTCTTCATGAGCTCAGTTCATTATCTGAACTCAACATTTCATACAATTCTTTTGAAGGTCCTGTACCACAACAGCTGATGACATTACCAAATTCTTTATCATTTTTGGGCAATCCTGTCCTATGTGTCAGTTTTTCATTGTCACGTGGCTTGAATTTCACTCAAAACAGCTATTTAAAGCCATGTGACACAAAATCAAAAGACTCAAAAAGCCTCAGTAAAGTTGCAATTGTGATGATAGCACTTGGATCCTCAATATTTGTTGTTCTGCTGGTGGGACTAATTTATATATCTTTTGTCAGAAAAACTAAGCAGGAAGCAATAATCACTGAGAAAGATGATTCTTCAGCTCTTCTCAGTAAAGTGATGGAAGCTACAGAAAACCTAAATGATAAATATATCATTGGCAGAGGAGCTCAAGGAGTTGTTTATAAAGCTGTAATAGGCCCAGACAAAATTTTGGCTGTCAAGAAGCTTGTATTTGCTCAGAATGAAGGGAAAAACTTAAGCATGACCACAGAAATTCAAACCCTTGGAAAGATTAGGCATAGAAATTTGGTCAAATTGGAAAACTGCTGGTTGAGAGAAAACTATGGTCTAATCTCATACAGATACATGCCAAATGGAAGCCTTTATGATGCTTTGCATGAGATGAATCCACCACAATCCATAGAATGGAATGTCCGCAATAAGATAGCTATTGGAATTGCTCATGGATTGGCTTATCTTCATTATTACTGTGATCCTGTCATAGTGCACCGAGACATCAAAACAAGCAACATACTTCTAGATTCTGAAATGGAGCCTCATATTTCAGATTTTGGTGTTGCTAAGCTTTTGGATCAGGCTTCTACCTCAACACAGTCAATATTTGTTACTGGTACAATTGGTTATATTTCACCAGAGAATGCTTATACAAGAGCTAAGGGTAAGGAGTCTGATGTATACAGTTATGGGGTAGTTTTGCTGGAGCTGATATCCAGAAAGAAGCCATTAGATCCATCATTTATGGAAGGAACAGATATTGTTAATTGGGTTAGTTCTGTCTGGGAGGAAACAGGAGCTATTGATGAAATTGTTGATTCAGAGCTTGCTGATGAAATTTCAAATTCTGATGTGAGGAAACAAGTAACCAAGGTGCTTTTGGTGGCATTGAGATGTACAGAAAGGGATCCACGTAAGAGACTCACAATGAGAGATGTTATCAAGCATTTGTAG	1968	0.3811	MFNKFNGTLPPNLCFGKQLVKLNMGGNQFHGSIPSDVGRCTTLTRVRLEDNNFTGPLPDFETNPNVLYMSVSNNKISGAIPSSLGNCTNLSFLDLSMNSFTGIVPSELGNLVNLQTLDLSLNKLEGPLPHQLSNCTKMNRFDVGFNFLNGTFPSSLQSWTTLTTLILRENHFSGGIPAFLSEFQALIELQLGGNMFGGTIPRSIGKLQNLLYGLNLSANGLIGELPEEIGNLKSLLKLDLSWNNLTGSIQVLHELSSLSELNISYNSFEGPVPQQLMTLPNSLSFLGNPVLCVSFSLSRGLNFTQNSYLKPCDTKSKDSKSLSKVAIVMIALGSSIFVVLLVGLIYISFVRKTKQEAIITEKDDSSALLSKVMEATENLNDKYIIGRGAQGVVYKAVIGPDKILAVKKLVFAQNEGKNLSMTTEIQTLGKIRHRNLVKLENCWLRENYGLISYRYMPNGSLYDALHEMNPPQSIEWNVRNKIAIGIAHGLAYLHYYCDPVIVHRDIKTSNILLDSEMEPHISDFGVAKLLDQASTSTQSIFVTGTIGYISPENAYTRAKGKESDVYSYGVVLLELISRKKPLDPSFMEGTDIVNWVSSVWEETGAIDEIVDSELADEISNSDVRKQVTKVLLVALRCTERDPRKRLTMRDVIKHL.	656

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g06875	655	Gene3D	Transferase(Phosphotransferase) domain 1	456	655	-	-
	Seca8g06875	655	SUPERFAMILY	L domain-like	5	301	-	-
	Seca8g06875	655	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	501	513	IPR008271	GO:0004672\|GO:0006468
	Seca8g06875	655	FunFam	Serine/threonine-protein kinase-like protein CCR4	456	655	-	-
	Seca8g06875	655	SMART	serkin_6	379	655	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g06875	655	FunFam	Leucine-rich repeat receptor-like protein kinase PEPR1	17	300	-	-
	Seca8g06875	655	Gene3D	Phosphorylase Kinase; domain 1	345	455	-	-
	Seca8g06875	655	ProSiteProfiles	Protein kinase domain profile.	379	655	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g06875	655	Gene3D	Ribonuclease Inhibitor	1	300	IPR032675	-
	Seca8g06875	655	SUPERFAMILY	Protein kinase-like (PK-like)	368	655	IPR011009	-
	Seca8g06875	655	FunFam	LRR receptor-like serine/threonine-protein kinase RPK2	345	455	-	-
	Seca8g06875	655	PANTHER	LEUCINE RICH REPEAT KINASE 2	3	655	-	-
	Seca8g06875	655	PRINTS	Leucine-rich repeat signature	90	103	-	-
	Seca8g06875	655	PRINTS	Leucine-rich repeat signature	111	124	-	-
	Seca8g06875	655	Coils	Coil	652	655	-	-
	Seca8g06875	655	ProSiteProfiles	Leucine-rich repeat profile.	234	256	IPR001611	GO:0005515
	Seca8g06875	655	Pfam	Leucine Rich repeat	233	247	IPR001611	GO:0005515
	Seca8g06875	655	Pfam	Protein kinase domain	382	654	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g06875	Seca-Chr8	163905205	163909010	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g06875	3	655	Receptor kinase-like Gene Family	AT1G73080	50.972	0.0	649

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Seca8g06875		Pkinase	4.7e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g06875	-		-	gmx:100817655	1041.57