Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06873 ATGAACAGCACTTCCAATTCTGGTAACCCTTCAGGGGACTCAAATGTATATGCTTATTATTCTGTTGGATTATCTCTTGGCTTTCTCCTCCTGATGATGTTCATAGCTCTCATTACATATTTCTGTAGCAGTAGAAATTTGCAAAACAGGCAATCTAGAGGCAGTGTCAGTAGCAACAACAGTTCTCACAGGACCATGGTCATGGAGAGAGACACTGCTGTGAATGTGATTATTCAAATTTATGGGGAAGAACAAGATGCCATCCTGAACAGTTACCCCATGATGTTATACTCTCAAGTCAAGCACCATAAGCCTGATTCAACATCACTCAGCTGCTCAATATGCTTGGCAGATTACAGGGATTCAGATTGGTTGCGCCTATTACCTGATTGTGGTCACTTTTTTCATAAAGAGTGTATTGACATGTGGTTTAGGCTGAATTTCTCATGTCCAATGTGTCGGAATTCGCCATTGCCAACTCCTCTTTCAACTCCCCTTGCTGAAGTTACTCCCTTGGCAACAAGACATGATTGA 534 0.4176 MNSTSNSGNPSGDSNVYAYYSVGLSLGFLLLMMFIALITYFCSSRNLQNRQSRGSVSSNNSSHRTMVMERDTAVNVIIQIYGEEQDAILNSYPMMLYSQVKHHKPDSTSLSCSICLADYRDSDWLRLLPDCGHFFHKECIDMWFRLNFSCPMCRNSPLPTPLSTPLAEVTPLATRHD. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06873 177 SUPERFAMILY RING/U-box 88 159 - -
Seca8g06873 177 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 168 IPR045899 -
Seca8g06873 177 SMART ring_2 112 153 IPR001841 -
Seca8g06873 177 Pfam Ring finger domain 111 154 IPR001841 -
Seca8g06873 177 CDD RING-H2_EL5-like 111 154 - -
Seca8g06873 177 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Seca8g06873 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 158 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06873 Seca-Chr8 163891272 163891805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06873 20 175 C3H Transcription Factor Family AT5G06490 34.302 1.13e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06873 - - adu:107466513 171.785