Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06861 ATGATGGCAGGAAACTTCAGATTCATGATGGATCAGAAGGATGTTGTTAGATTCTTGACTACAACTGTTGATAGTTTCATTCAAGATCGATTAATCAACAAAGAACAAAGAACCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTGTGACAAAGACACTGAGGTGGAATACTCTGATCAAGCAGTGTTAGCAAATCTTGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTATAATATGGAAACTAAGCTTGCCAGACTAGATTATGCTGAGAAAATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTCCTACCTCTCAGCTTGGGCACACCTAAACCTATCCTACTTATGGAAGTTGAGGAACAACATTCAAAATTGTATTTTTCATGTTCTTGAGATGTTCATTGTTGATCCTTTCTTCTCTCGGATTGATTTTGCTCCTGAACTCTGGAAAAACCTGTTTCTTCCACACATGAGCTCAATTGTTGGGTGGTATTCAGAAGAGAGGCACAGGCTTATGATGGAAGTGATACCTGACTCTTCTGATTTGTCCTTTACAGCTGATTTTGATCAATTTTTCAACGAGTCTTTGGTATTTTCTATGAGGCCACACCAATTAGAAAAGTTGCAAAAGCTGGAGCAGCTATATGGAGAGTCATTGGATGAGAACACACGGCTATATGCAAAATACTATAATGATTGCATGAACTCTGATTCCACCTCAAGCAAGAAGGTAGCTCCTATGTTGCCAATTGCCGAGCCTCCAATGACTCCTTTGCATGAGTTGAGCCGGTCTATTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCTGGATTTTCTTTGGCACCAAGATCTAAAGATGGTTTAAATGAAACAGTGAGAGAGAATTTAACTTCCAGTCATTCGAAGCAGGAGAAATCATCCCTATGGGGTGCTAAGGAGAGCATCATTGAAGAGAATGAAGATGATTCAGATTCTGAGCTTGATGATGCATCTGTGGATTCTGATAACAAAAACAATGTTTTCTCACCTGAAATGAAGAATATCAAGGATGAGGACATTGGGCCAAAAGTGAATTTATCAAACCAGAAGAATCGAATACATTCTCCTGAAATATTTTCTCCCTTGGGTTCCCCAAGAACTGCTACAAATAATGCATCTACAAATTCTGATATAAGAAGTAAAAGAGAATCTAAGTTCTTGCGCTTAATGTCTAGTCGTGTCAGGCACTCAAGTATTTCTGACTCTTTATCATCATCTCCTGACATGAGCACAGAGCACATTGTCAACTCTGATAACGAAGTGATGGTCTTGAAGAATATTCAGAGGAAAAACAATAACCAAACACCAAGTATGAATCATGACAATGAGAATAGCCTGGTACTAAATGACAGTTCCCTTTGTGAAAGTGATGATGGATATCAAAGCTTCACTTCATTGCCAAAACTAGAGAAGCTGACTATTGGATCAAAACCACCCAAAGATTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGTTCAGAACAGGAAACACAACATGCCCCATCACACGACAGCCTTTATCTGCAAGCACATTACCCAAAACAAACTATGTTTTGAAGAGATTGATTACATCATGGAAAGAACAGAATCCTGAACTAGCTCAAGAATTCTCCAATGCTAACACACCAAGGGGTTCTTCCTGTTCTCCCTCTGCAAAAGACATCCCAATGCTCTCCACTATGCAAAGATCAACTGATATACCAAGTCATAAGAATAAAGAAGATTATGTCAGACAAAGGAGCAACAGATTTATGCGGGTTGCTGTCACAACATCTCCAACTAGTGTTCTGTCTCAAGCTGCAGTTGAAACAATCATGAATTCCTTGAAACCTTACATTGCAAGTCTCTGCACATCAGAAAACTTGCAAGAATGTGAAGAAGCTGTGTTGGAAATAGCAAGATTGTGGAAGGATTCAAAGACTGATGCTCAGATTCATTCTTTCTTATCAAAGCCAACTATCATAAGTGGTTTAGTAGAAATTCTTTCAGCTTCTCTGATTAGAGAAGTTCTGAAAACATCAATTTATATTCTTTCCGAGCTAATTTTTGCAGATGAAAGTGTTGGAGAAATACTTAACAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGGCTGAGGCTGCTATTCTCATTTACCAACTACGGCCAGTTTTCGCTCAGCTTTCATCACATGAACTTATACCATCTCTTGTCCAGGTGATCCAGAACAAAAATGAGGAGTTAGATGATTTTCAGTTAGCTATAGACCCCAAAGATGCTGCAATAGCAGTTCTTGAGCAAATATTGATGGGAGGGGATGAACATAACAGGTCTCTTAATGCTATGAGTGTTATTTCAGCAAATGGAATTCCAGCCTTGGTGAAGTATTTGGAGAGAATGGAAGGAAGGAGGTCTGTTGTTGCCATACTTTTGTGTTGTATGCAAGCTGAAAAGAGTTGCAAGAGCTTGATAGCAAACAGAATTGAATTGTCTCCTGTTCTCGAATTATTTCACTCTGGAAATGATAGTGTAAGAGGCATCTGTGTGGAATTTCTCTCAGAACTGGTTCAATTGAATAGAAGGACGTTCTGTAACCAGATATTACAGACAATCAAGGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATACCTTCAGATGGCTCCAATGGAGCATCAAATTGCTGTTTCCAGTCTTCTTCTTCAGCTTGATCTTCTGGTTGAGCCGCGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTCTGGCAAAAGGACTTCTCAAATACTCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATTGGACATGTCACTTCCTCCGGAAAGTCATATACTGAAGCTTGGTTGCTCAAGATTGCAGGATTCGATCAACCTTACAATGCTATAATGAAGGCTGAGCAGTTGGGACAGTATGACAACGATTTGATGGAAACAATGGAGGATGAAAAGAATGCTATGAACTCTTGGCAGAAAAGAGTAGCTTTTGTGCTTTGCAATCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACTTGGCTCACACACATGCTCTCTACTCTTCCGGATACCGGTGTAAGGGATGTTGCTCGCAAATCCTTGCTTGATGAACTTATAAATGTCCTTCAGTCATCCAAGAACTTGGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAGACATTCATTAGTGATCCATTTGCCCACGAAGCATTTAGAGTTTATGCTAAAAGCATTTATAGAACCTTGAGGAAGCTGAAGAAATATTCAATGGTGGCTGTTGATATTATGAAAGTCATACTAAACTTACAATCTGTTGATGTGACAGAATTGTGGAGCTGTAAAGAAGTAGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTTCTTTCTTTGCTTTATCTAAATGGTCAGGTCTTCAGTGGGCACTCTGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCAAGAGTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACTTCTCTTTGTTCTTCAGTTGATAGACTATACAGTGGCTCCTTAGACAAAACCATCCGGGTTTGGACAATTAAACCTGATGGGATTAAATGTATAGATGTTTATGACATTAAGGAAGCAGTATATGAGCTGACAGCCGATGCTAAATTGGCATGCTATGTATCTCAAGGAACTGGAGTTAAGGTTTTTAATTGGTCAGAGGCTCCGAAGCACATCAATTTCAACAAATATGTGAAATGCCTTGCTGTTACTGGGGACAAACTGTATTGTGGTTGCTCTGGTTACAGCATTCAGGAGGTTGACTTGTCCAAATATACATCAAATTCATTCTTCTCTGGTACAAGAAAATTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGATGATTACCTCTTTGCTTGTGGTTCTTCTGTTGATGCAACCGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGATCACTCTCAACTGGACTTGACATCCATCGTATAGCCATCAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTAAAAGATAAGTTAACCCGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATTACATCATTAGTATCAGATGCAGATGGTATGATGCTCTTTGTTGGTTCCTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4464 0.3949 MMAGNFRFMMDQKDVVRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSCDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQNCIFHVLEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLVFSMRPHQLEKLQKLEQLYGESLDENTRLYAKYYNDCMNSDSTSSKKVAPMLPIAEPPMTPLHELSRSIPDFVKFGPILPKSAGFSLAPRSKDGLNETVRENLTSSHSKQEKSSLWGAKESIIEENEDDSDSELDDASVDSDNKNNVFSPEMKNIKDEDIGPKVNLSNQKNRIHSPEIFSPLGSPRTATNNASTNSDIRSKRESKFLRLMSSRVRHSSISDSLSSSPDMSTEHIVNSDNEVMVLKNIQRKNNNQTPSMNHDNENSLVLNDSSLCESDDGYQSFTSLPKLEKLTIGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWFRTGNTTCPITRQPLSASTLPKTNYVLKRLITSWKEQNPELAQEFSNANTPRGSSCSPSAKDIPMLSTMQRSTDIPSHKNKEDYVRQRSNRFMRVAVTTSPTSVLSQAAVETIMNSLKPYIASLCTSENLQECEEAVLEIARLWKDSKTDAQIHSFLSKPTIISGLVEILSASLIREVLKTSIYILSELIFADESVGEILNSVDSDFDCLATLLKNGLAEAAILIYQLRPVFAQLSSHELIPSLVQVIQNKNEELDDFQLAIDPKDAAIAVLEQILMGGDEHNRSLNAMSVISANGIPALVKYLERMEGRRSVVAILLCCMQAEKSCKSLIANRIELSPVLELFHSGNDSVRGICVEFLSELVQLNRRTFCNQILQTIKDEGAFSTMHTFLVYLQMAPMEHQIAVSSLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHVTSSGKSYTEAWLLKIAGFDQPYNAIMKAEQLGQYDNDLMETMEDEKNAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLATWLTHMLSTLPDTGVRDVARKSLLDELINVLQSSKNLEEKILATLALKTFISDPFAHEAFRVYAKSIYRTLRKLKKYSMVAVDIMKVILNLQSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVFSGHSDGTIKVWDARKRIPRVIQETHEHTKAVTSLCSSVDRLYSGSLDKTIRVWTIKPDGIKCIDVYDIKEAVYELTADAKLACYVSQGTGVKVFNWSEAPKHINFNKYVKCLAVTGDKLYCGCSGYSIQEVDLSKYTSNSFFSGTRKLLGKQTIHSLQIHDDYLFACGSSVDATAGKIFSLSSKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKLTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD. 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06861 1487 SUPERFAMILY RING/U-box 511 584 - -
Seca8g06861 1487 SMART WD40_4 1444 1485 IPR001680 GO:0005515
Seca8g06861 1487 SMART WD40_4 1196 1234 IPR001680 GO:0005515
Seca8g06861 1487 SMART WD40_4 1239 1276 IPR001680 GO:0005515
Seca8g06861 1487 SMART Ubox_2 515 579 IPR003613 GO:0004842|GO:0016567
Seca8g06861 1487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1453 1487 - -
Seca8g06861 1487 SUPERFAMILY WD40 repeat-like 1219 1486 IPR036322 GO:0005515
Seca8g06861 1487 Coils Coil 1115 1135 - -
Seca8g06861 1487 CDD RING-Ubox_PUB 513 565 IPR045210 -
Seca8g06861 1487 SUPERFAMILY ARM repeat 624 1168 IPR016024 -
Seca8g06861 1487 ProSiteProfiles Trp-Asp (WD) repeats profile. 1246 1278 IPR001680 GO:0005515
Seca8g06861 1487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 594 IPR013083 -
Seca8g06861 1487 ProSiteProfiles Trp-Asp (WD) repeats profile. 1453 1487 IPR001680 GO:0005515
Seca8g06861 1487 Pfam WD domain, G-beta repeat 1219 1234 IPR001680 GO:0005515
Seca8g06861 1487 Pfam WD domain, G-beta repeat 1455 1484 IPR001680 GO:0005515
Seca8g06861 1487 Pfam WD domain, G-beta repeat 1247 1275 IPR001680 GO:0005515
Seca8g06861 1487 MobiDBLite consensus disorder prediction 339 413 - -
Seca8g06861 1487 Gene3D - 1187 1284 IPR015943 GO:0005515
Seca8g06861 1487 Gene3D - 1285 1487 IPR015943 GO:0005515
Seca8g06861 1487 ProSiteProfiles U-box domain profile. 511 586 IPR003613 GO:0004842|GO:0016567
Seca8g06861 1487 MobiDBLite consensus disorder prediction 396 411 - -
Seca8g06861 1487 Pfam U-box domain 513 583 IPR003613 GO:0004842|GO:0016567
Seca8g06861 1487 Gene3D - 652 1186 IPR011989 -
Seca8g06861 1487 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06861 Seca-Chr8 163758426 163766494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06861 502 904 U-box Gene Family AT1G23030 25.952 4.59e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06861 - - gmx:100776142 2586.22