Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06849 ATGACAACAGCAGAAGAAACTTCAAGTTTAAAACTGTTGAGCCAACATCTCTTGGGGGATATTTCAGACTCTTTTCTCACCAATCTCATTCCTGTAAAATTTGAAGACCCATCATCAGAATTTGATTTGGATTCATATTTTTCAGAACAAAGCAGTTTCTGCACTTTCCTTGAATGCTTTGGTTTTGAAGCAGATACAGAAGTTGTTGACCTCACCTCTCATAAGGTCCAAAACTCCATTCCAGACAGTCCCTCAGAGGAAACCCAGAAGTCCAATTCGCCAGAACCAATGGTGTCAGGGAAAAAGGAACCAACTTGCTATGAGACAAGGCGTTACAGAGGAGTAAGGAGAAGGCCATGGGGCAAGTTTGCTGCAGAGATCCGTGACCCCACAAGGAAAGGGACCAGGGTGTGGCTAGGCACATTTGACACTGATATTGATGCTGCCAAGGCTTATGATTGTGCTGCCTTCAGGATGAGGGGTCAAAAAGCCATATTGAATTTCCCTCTGGAGGCTGGAAAGTCCAACCCAGAGCCTAGCAATTGTGGCAGGAAAAGAAGAAGAGAGCAGAGAGCAGCTGGAACAAGTTCAAGTTATGTTATGTCCTGA 609 0.4466 MTTAEETSSLKLLSQHLLGDISDSFLTNLIPVKFEDPSSEFDLDSYFSEQSSFCTFLECFGFEADTEVVDLTSHKVQNSIPDSPSEETQKSNSPEPMVSGKKEPTCYETRRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTDIDAAKAYDCAAFRMRGQKAILNFPLEAGKSNPEPSNCGRKRRREQRAAGTSSSYVMS. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06849 202 ProSiteProfiles AP2/ERF domain profile. 111 169 IPR001471 GO:0003700|GO:0006355
Seca8g06849 202 Pfam AP2 domain 111 161 IPR001471 GO:0003700|GO:0006355
Seca8g06849 202 SUPERFAMILY DNA-binding domain 111 171 IPR016177 GO:0003677
Seca8g06849 202 PANTHER DNA-BINDING DOMAIN 87 181 IPR044808 GO:0003700|GO:0009873
Seca8g06849 202 CDD AP2 119 169 IPR001471 GO:0003700|GO:0006355
Seca8g06849 202 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Seca8g06849 202 PRINTS Ethylene responsive element binding protein signature 151 171 IPR001471 GO:0003700|GO:0006355
Seca8g06849 202 MobiDBLite consensus disorder prediction 170 202 - -
Seca8g06849 202 FunFam Ethylene-responsive transcription factor 2 110 171 - -
Seca8g06849 202 MobiDBLite consensus disorder prediction 76 103 - -
Seca8g06849 202 MobiDBLite consensus disorder prediction 76 98 - -
Seca8g06849 202 Gene3D AP2/ERF domain 110 171 IPR036955 GO:0003700|GO:0006355
Seca8g06849 202 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06849 Seca-Chr8 163614394 163615145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06849 1 188 AP2-EREBP Transcription Factor Family AT5G07580 43.719 1.23e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g06849 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06849 - - gmx:100306125 287.73