Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06846 ATGACAGCTTCACTGTCATGGGGGGATGAAGAAACTCGGACTGTGTTTCCTTTGTATATCTGTCTGGCAATGCCAGATCCTAATAAGAAAGATGCAGAGTATTCTGCTGCTTATCAAATCAAGCGGAAATACATCCTTCGAGATTCCTTTGGCATTGATGGCAGTACTAAACTCCAAGCAGACTTAATCCTCCCTGAAGTTAAAAAGTTAGCTGTGAAGGCTAGATCTGGCTCATTTTCTGTCCTGATTTACACCCGTGTGGAAAATCCAGATTCATCATCTGGAGTCAATGCAAGCCTGGCGCCTTTGGATTTGACTTCTTATGGATCAATAGCAGGAGAGTATTGCTTATACAGGAAAGTATCTTTAGAATCACTTTATCTGGCTTGGAATGGTTCTCCAAATTTTAGATTGGGACAGCGAGCTGAGATGGTGTCTACCGTTGATATGCTTCCATGTATTTTGAAGCTTGAATCTGTAGATAAGGGCCAGAGAATCTCAATCAAAGATCTCTTTAATTCTGAGAGTGAGAGAAAGAGTACATCAAAGCAAGTTCAAATCACATTTTCTGCTGAAGAGTTTGGGGCCAAGGAAAGATCTCCCTACCTTACATATTCAAGCAGAAATCTTCCGTGTTCACCATTCTCTCGTATCCTTCGGTTGAAAGAAGGAAATGTCATGTTTCATTACAGGTATTACAATAATAGGCTGCAGAGAACAGAAGCCACTGAAGATTTCACCTGTCCATTCTGTTTGGTTGCATGTGCAAGCTATAAGGGCCTAAGATGTCATTTGGTCTTATCTCATGATCTTTTCAACTTTGAATTTTCGGCATCGGAGGATTGCCCGGCTGTAACTGTGTCTGTGAAAACTGATATCCAGAGATATGAGATTGATGCAAATGGTATTGGTCCAAATTCAAAAGATTTTATCTTTTGTGCCAAGCCCTTTAAACGCAGACGTCCAGAGAATGTATCTTTTGAAAATGAAAAGGATGCGGACCCATTGGTCTTAGAGTCTGAAATTCCTGCAGGAGATACTGAGCTTTTGGAGAAGGCTGATTCTGAAATTCCTGCTGGAGACACTGGGCTTTTGGAGAAGGCTGATTCTGAAATTCCTGCAGGAGATACTGAGCTTTTGGAGAAGGCTGATGGTGTTTCAAATGCAATTGTTGCATCTCAGGATAGTGTCCCACCAATACCTGAGCATGATCATGGAACACCTGCAGTGCTAAAGGTTGCCAAGAAAGGGAAGTTACCAGTTGGGCGTTCTGGCCTGCGAAACATTTCCCTGTTGAAGAAGCGACAGTTTTATCACTCTCGCAGAGGCCAGCCAATGGCACTCGAAGAAGTTCTATCAGACTGGGATAGTGAGGATGAAAGAGATGAAGAGATTGAAAACCTTGAAGAACAACTGATGATAAATAGTTTTACTGATCTGACACCAGTTGAGAAACAATTCATGCATATGTGGAACAAATTTATTCGGAAGCAAGGAGTGCGGGCATTTAGTCACGTTCATTGGGCATGTGAGGCTTTCGCAAAATTTCATGGCCTTGAGTTTGTTCAATCCCCCCAATTAGCTTGGCAATTCAGACTGTTGATGCTCAGACTAATTAATCTTAACCTTCTAGATGGACAGACCATGAATCAATGTAATCTTATTCTTGAACATTACCAGAAGCAGCAGTCAGATCCCAGAGGCTAA 1707 0.4189 MTASLSWGDEETRTVFPLYICLAMPDPNKKDAEYSAAYQIKRKYILRDSFGIDGSTKLQADLILPEVKKLAVKARSGSFSVLIYTRVENPDSSSGVNASLAPLDLTSYGSIAGEYCLYRKVSLESLYLAWNGSPNFRLGQRAEMVSTVDMLPCILKLESVDKGQRISIKDLFNSESERKSTSKQVQITFSAEEFGAKERSPYLTYSSRNLPCSPFSRILRLKEGNVMFHYRYYNNRLQRTEATEDFTCPFCLVACASYKGLRCHLVLSHDLFNFEFSASEDCPAVTVSVKTDIQRYEIDANGIGPNSKDFIFCAKPFKRRRPENVSFENEKDADPLVLESEIPAGDTELLEKADSEIPAGDTGLLEKADSEIPAGDTELLEKADGVSNAIVASQDSVPPIPEHDHGTPAVLKVAKKGKLPVGRSGLRNISLLKKRQFYHSRRGQPMALEEVLSDWDSEDERDEEIENLEEQLMINSFTDLTPVEKQFMHMWNKFIRKQGVRAFSHVHWACEAFAKFHGLEFVQSPQLAWQFRLLMLRLINLNLLDGQTMNQCNLILEHYQKQQSDPRG. 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06846 568 Pfam VEFS-Box of polycomb protein 419 554 IPR019135 -
Seca8g06846 568 CDD VEFS-box_EMF2-like 432 559 - -
Seca8g06846 568 CDD ZnB-Zn_EMF2-like 220 293 - -
Seca8g06846 568 PANTHER POLYCOMB GROUP PROTEIN 9 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06846 Seca-Chr8 163529786 163553999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06846 11 560 C2H2 Transcription Factor Family AT5G51230 42.391 3.16e-136 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06846 - - gmx:100798991 511.531