Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06844 ATGCTAGAAAGTGAAGCCATGGGCATGGCTGTGCACATAAATCTAAAGCTCCATCACCTCTACCTTGTGATCCTATTCCTAGTAGTAGCACTAGCAAGAGCAGCCTCTCAACCAATGCCAAACTGCCCCCAAAACTGTGGCAATCTAAACATCCCATACCCATTTGGAACAAGTGAAGGTTGTTATTTGGATAACACTTTCCTCATCAGGTGTAACCATAACTCCACCCCTAATTTCTTGGGCCAAGACAACAATATAACCGTTCTCAACATATCTCTAGATGGGGAACTTGTCGTTTCGAGTCCAGTAGTCCACGATTGCTATGACATCAAAGGCGGCAACGATTTCCGTTATTCTGTTACGGAAAACGGTTTCAATTTGACTCATTTTTCTATCTCAAGCAAGAACAAATTTACGGCACTTGGCTGTGACACCGTTGGAATATTCGTTGGCTATGATCAGAACAGAAACAAGGCTACAAGAAAATTAGGATGTGTATCCATGTGTAGCACGGTGGTTGATGAAATCAAAACGGATGGCAATGGTGGAACTTGTAATTCTGGTAATGGTTGTTGCCAAATTTCAATTCCGGATGGACTGTATGGTTTTGCAATGCAAACTTGGAGTTGGAACAATCACTCCACCGTACTTGATTTCAATCCTTGTAACTATGCGTTTACGGTTAGAGAAGGAGATTACAGATTCTCTTCAACGGATCTTAAGAAACTTGAAAAGGAGAGTGTGCCTATGGTGCTTGATTGGGCAGTGGGAAATCAAGGGTACTGTAAAGAAGCTCAATATCTTAGTAGGTATGCATGCAAGGCTAAGAATAGTGTTTGCCACGATTCAACGAATGGAATTGGGTATATTTGCAAATGCAAACATGGTTTCATGGGAAACCCTTACCTCCATCATGGCTGCCAAGCAGATATCAATGAATGCAATAGGAGGCCTAGCCCCTGCAGCAGAATATGCCAAAACGTTGCTGGGACGTATAAGTGTTCATGCCCGAAGGGATATGAGGGAGATGGGTTGAGAGATGGTGAAGGATGCCGGCCCAAAGACAAATCCATGGGGAATCTCATACTTATAATTGGACTGAGTTTGAGCTTAAGTCTATTGGCAGTAATTGTGGGATGCATAAACATATATCCCCAAATACGTGAAAGAAAGCTCATCAAAATGAGAGAAAATTATTTTCAACAAAATGGTGGCATATTGTTACAACAACAAATTGATTCACATAATGGGTCAGCTGAAAGAGCCACTATCTTCACTGCTGAAGAGCTCAAGAAAGCTACCAACAATTATGATGAGGAAAGAATCATAGGTAAAGGTGGTCATGGAACAGTATATAAAGGTGTATTAACAAATGGCAGAGTTGTAGCCATTAAGAAGTCCATGGTTTCTAACCAGACAGAGATAGAACAATTCATCAATGAAGTGGTTGTGCTATCCCAAATCAATCACAGGAATGTTGTCAAGTTGCTAGGTTGTTGTTTAGAGACAGAGGTTCCTCTGCTTGTTTATGAATTTATCACTAATGGAACCCTTTGTGATCATCTACATGTTGAAGTTGAACATCAAGCATGTAAACTTTCATGGACCACTCGTTTAAGAATTGCAGCAGAGACAGCAGAAGCACTTGCATATTTGCACTCTGCTGCTTCTACACCAATCATACATAGAGATGTAAAAACTGCAAATATACTTCTAGATGAAAACCTCACAACAAAAGTTTCTGATTTTGGGGCTTCAAAGCTTGTTCCTCTTGATCAAACTCAATTAACCACTTTGGTGCAAGGAACATTGGGTTACCTTGATCCTGAATACTTTCAATCAAGTCAGCTAACAGAGAAGAGTGATGTTTATAGCTTTGGGGTTGTTCTGGCAGAACTGCTAACAAGCAAGAAGGCACTTTCATTTCATAGGCCTGAGATTCATAGAAATCTTTCTATGTATTTTGTTTCTTCAATGAATGAGGGTGGATTGCAACAAATCCTAGACAATGAAATAGTGAGTGATGCAAATGTTGAGCATATAATAGAAGTTGCTAATCTAGCAAAAAGGTGTCTTAGGCTAAAGGGAGAAGAAAGACCAACCATGAAAGAAGTGGCATTGGAGTTGGAGGGAATAAGGACTGTGGAAAAACATTCATTAGGAAAAGCTAATGTATATGAAGAAGAGACTGAGTACTTTCTCAAAGTAAGTTCACCCCTTTACATCATGGACAATGGAGAAGGTAGTGGTGGTAGCAGTACAATTACTAGGTTTTATAATTTGCAAAACCAGATATTGGAACCACTGGCTCTGGGTGATGGACGATAA 2328 0.4021 MLESEAMGMAVHINLKLHHLYLVILFLVVALARAASQPMPNCPQNCGNLNIPYPFGTSEGCYLDNTFLIRCNHNSTPNFLGQDNNITVLNISLDGELVVSSPVVHDCYDIKGGNDFRYSVTENGFNLTHFSISSKNKFTALGCDTVGIFVGYDQNRNKATRKLGCVSMCSTVVDEIKTDGNGGTCNSGNGCCQISIPDGLYGFAMQTWSWNNHSTVLDFNPCNYAFTVREGDYRFSSTDLKKLEKESVPMVLDWAVGNQGYCKEAQYLSRYACKAKNSVCHDSTNGIGYICKCKHGFMGNPYLHHGCQADINECNRRPSPCSRICQNVAGTYKCSCPKGYEGDGLRDGEGCRPKDKSMGNLILIIGLSLSLSLLAVIVGCINIYPQIRERKLIKMRENYFQQNGGILLQQQIDSHNGSAERATIFTAEELKKATNNYDEERIIGKGGHGTVYKGVLTNGRVVAIKKSMVSNQTEIEQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFITNGTLCDHLHVEVEHQACKLSWTTRLRIAAETAEALAYLHSAASTPIIHRDVKTANILLDENLTTKVSDFGASKLVPLDQTQLTTLVQGTLGYLDPEYFQSSQLTEKSDVYSFGVVLAELLTSKKALSFHRPEIHRNLSMYFVSSMNEGGLQQILDNEIVSDANVEHIIEVANLAKRCLRLKGEERPTMKEVALELEGIRTVEKHSLGKANVYEEETEYFLKVSSPLYIMDNGEGSGGSSTITRFYNLQNQILEPLALGDGR. 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06844 775 SUPERFAMILY EGF/Laminin 310 343 - -
Seca8g06844 775 FunFam Fibrillin 2 304 347 - -
Seca8g06844 775 SMART egf_5 313 352 IPR000742 -
Seca8g06844 775 SMART egf_5 261 308 IPR000742 -
Seca8g06844 775 ProSitePatterns Calcium-binding EGF-like domain signature. 310 334 IPR018097 GO:0005509
Seca8g06844 775 SMART egfca_6 310 352 IPR001881 GO:0005509
Seca8g06844 775 CDD STKc_IRAK 443 712 - -
Seca8g06844 775 Pfam Calcium-binding EGF domain 310 341 IPR001881 GO:0005509
Seca8g06844 775 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 716 IPR045274 GO:0007166
Seca8g06844 775 Gene3D Transferase(Phosphotransferase) domain 1 513 733 - -
Seca8g06844 775 Pfam Wall-associated receptor kinase galacturonan-binding 42 96 IPR025287 GO:0030247
Seca8g06844 775 FunFam Wall-associated receptor kinase 2 513 732 - -
Seca8g06844 775 ProSiteProfiles EGF-like domain profile. 310 343 IPR000742 -
Seca8g06844 775 SUPERFAMILY Protein kinase-like (PK-like) 421 709 IPR011009 -
Seca8g06844 775 ProSitePatterns Protein kinases ATP-binding region signature. 443 466 IPR017441 GO:0005524
Seca8g06844 775 ProSiteProfiles Protein kinase domain profile. 437 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06844 775 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 325 336 IPR000152 -
Seca8g06844 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 560 572 IPR008271 GO:0004672|GO:0006468
Seca8g06844 775 SMART serkin_6 437 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06844 775 FunFam Wall-associated receptor kinase 2 407 512 - -
Seca8g06844 775 Pfam Protein kinase domain 437 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06844 775 CDD EGF_CA 310 343 - -
Seca8g06844 775 Gene3D Laminin 269 344 - -
Seca8g06844 775 Gene3D Phosphorylase Kinase; domain 1 404 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06844 Seca-Chr8 163467538 163472174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06844 15 736 Receptor kinase-like Gene Family AT1G21230 47.003 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca8g06844 Pkinase 3.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06844 - - vun:114190859 1003.43