Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06839 ATGGAGGATGTTAAGGTTTTTGGTCTATGGTCAAGTCCATTTACCCAGAGGGTTGTGTGGGCACTAAAATTAAAGGGCGTGACTTATGAGTACATTGCTGAAGATCTTGCAAACAAGAGCAACCTGTTATTGGAGTACAATCCAATCTACAAGAAGGTTCCTGTTCTTGTACATAATGGAAAACCAATAGCAGAGTCAATGGTGATTCTTGAATACATTGAGGAGACTTGGCCTGAGATCTCTCTGTTGCCCCAAAACCCTCATCAGAGGTCCAATGTTCTTTTCTGGTCAAAATTCATCGACGAAAAGACAATGCACATGATCAAATTTTTTCGCTATGATGGAGAACAACAAGAGAGGGCAATGGAAGAGACTCGTGAAATCTTAAGAGTTATAGAAAAGGAAAGTGGGGTTGGTGAAAAGAAATTCATAGGTGGGAACACCATTGGTTTGGCAGACCTTGCCTTGGGATGGGTTGCTCATACTCTTGTGGCCATGGAAGATGTGGTTGGAGTCAAGTTCATCACAGCTGATGCCTTTCCTCACCTTCACTCTTGGGTAGGGAATTTCTTGGAAATTCCTTCTATACAAGAGAATCTCCCACCTCATGAGCTAGCAGTTGAGTATTTCAGGGAAAAGAGGAAGATGTTTCTTGCAATGGCTACCCAAGCCTCAAATATGGAGGTGGATACTGCCTTGAGCTTCCGGATCTATATGGAAGCCACATTTCCCAAGATGGAAATCTTCACCCAAAAGGAATTGGCAACTTGTTTGCAAGAAATGGCAACAGGATCAAAGTTTTTGGACAGTACAATTATAAGAGGTTCTCACCCATTCACTGCTTCTCATCATGTTCATGTATTAAGAAGTGAGGTAAACTCATCAATAGTATCACCTGAAAAGCTTTTTTCATATTCAAATTCTACTTCAATGAAAGAAGAGGTGCCTTTAGCTGCCTTGAAGAGTCACATCCCTGCAAAGTTCAATGATCATGAAGACATGAAGAATGGGAAAGCAAAAAACCAATCCGTTTCTAGATTCAATTCTATCTCCACTCCTGGTGTCCCAGCCTCCTCAGATACAAAACATAGCTCTATTCCTCTAAATCTTTTGGAAACTCTCCCATCATTAACCATAGCACCAGTATCTGATGAGCCACCTGCTTCTTTAGCTTCTTCTTCTTCCACACCCAAATTTCCAAACTTGACTTTGTTTTTGCAGGAACCCTCCATGCTGTACACATCATCCTCAAACATGAAAAGTGGTGAAGTCATGTCAGCAACTTCAGACCCCACATACCATGTGTCCCAGTTTGGCCAAACCCAGCATCAAACAGGTAGTGATTCACACAGAATGAATAAGAATCTGACAAATCTGCGTTACAAGTCTTTCAATGACAATTGGTTGAGTACCACTAAGACTCAGCCTTTGAAGTATAGTGGAAGAGGCAAGCTGTTTAAAGGGGTGAGGCAGAGACATTGGGGGAAATGGGTTGCTGAGATTAGGTTACCAAGAAACAGGACAAGGGTTTGGTTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTAAGAGGAGAATATGCTCAGTTGAACTTTCCAGATCTAAAGCATGTAATTCAGGCCAATTCTTTGAATGGAACTACTGCTGCACTTGTGGAGGCAAAACTGCAAGCAATATCTCAAGGTGTTGTTTCCTCTCATAGGAAGCCTAATTCACCAGCAGGGTCAAACAATAAGCACACCACTGATGATAATGGCGAATTGAAAAGCAAAAAAGGCAAGGATTCAACCATCAAGGAATGGCAGTTTGATATAGAGAGCAGGATTGGACTTGGAGGTGACACAACTGAGAGAAGCAAAAATACAAATCATGAGATATCAGATGTGGAAGGTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATCATTTGGGATGAACTTTTAGTCTTTGATTCATGA 1992 0.4167 MEDVKVFGLWSSPFTQRVVWALKLKGVTYEYIAEDLANKSNLLLEYNPIYKKVPVLVHNGKPIAESMVILEYIEETWPEISLLPQNPHQRSNVLFWSKFIDEKTMHMIKFFRYDGEQQERAMEETREILRVIEKESGVGEKKFIGGNTIGLADLALGWVAHTLVAMEDVVGVKFITADAFPHLHSWVGNFLEIPSIQENLPPHELAVEYFREKRKMFLAMATQASNMEVDTALSFRIYMEATFPKMEIFTQKELATCLQEMATGSKFLDSTIIRGSHPFTASHHVHVLRSEVNSSIVSPEKLFSYSNSTSMKEEVPLAALKSHIPAKFNDHEDMKNGKAKNQSVSRFNSISTPGVPASSDTKHSSIPLNLLETLPSLTIAPVSDEPPASLASSSSTPKFPNLTLFLQEPSMLYTSSSNMKSGEVMSATSDPTYHVSQFGQTQHQTGSDSHRMNKNLTNLRYKSFNDNWLSTTKTQPLKYSGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVVSSHRKPNSPAGSNNKHTTDDNGELKSKKGKDSTIKEWQFDIESRIGLGGDTTERSKNTNHEISDVEGVQLSRMPSLDMDIIWDELLVFDS. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06839 663 FunFam Tau class glutathione S-transferase 83 220 - -
Seca8g06839 663 MobiDBLite consensus disorder prediction 571 604 - -
Seca8g06839 663 SUPERFAMILY Thioredoxin-like 3 104 IPR036249 -
Seca8g06839 663 Gene3D - 86 221 - -
Seca8g06839 663 MobiDBLite consensus disorder prediction 571 590 - -
Seca8g06839 663 SFLD Main.3: Omega- and Tau-like 1 221 IPR045073 -
Seca8g06839 663 ProSiteProfiles AP2/ERF domain profile. 485 542 IPR001471 GO:0003700|GO:0006355
Seca8g06839 663 SUPERFAMILY GST C-terminal domain-like 75 217 IPR036282 -
Seca8g06839 663 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 217 IPR010987 -
Seca8g06839 663 Pfam Glutathione S-transferase, C-terminal domain 107 194 IPR004046 -
Seca8g06839 663 MobiDBLite consensus disorder prediction 340 363 - -
Seca8g06839 663 SFLD Main (cytGST) 1 221 - -
Seca8g06839 663 Pfam AP2 domain 486 534 IPR001471 GO:0003700|GO:0006355
Seca8g06839 663 MobiDBLite consensus disorder prediction 328 363 - -
Seca8g06839 663 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 334 658 - -
Seca8g06839 663 FunFam Ethylene-responsive transcription factor 2 484 543 - -
Seca8g06839 663 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Seca8g06839 663 CDD GST_N_Tau 4 77 - -
Seca8g06839 663 Pfam Glutathione S-transferase, N-terminal domain 3 74 IPR004045 -
Seca8g06839 663 SMART rav1_2 485 548 IPR001471 GO:0003700|GO:0006355
Seca8g06839 663 Gene3D AP2/ERF domain 485 543 IPR036955 GO:0003700|GO:0006355
Seca8g06839 663 PRINTS Ethylene responsive element binding protein signature 486 497 IPR001471 GO:0003700|GO:0006355
Seca8g06839 663 PRINTS Ethylene responsive element binding protein signature 508 524 IPR001471 GO:0003700|GO:0006355
Seca8g06839 663 Coils Coil 115 135 - -
Seca8g06839 663 Gene3D Glutaredoxin 1 85 - -
Seca8g06839 663 CDD GST_C_Tau 87 212 IPR045074 GO:0004364|GO:0006749
Seca8g06839 663 FunFam Tau class glutathione S-transferase 1 85 - -
Seca8g06839 663 SUPERFAMILY DNA-binding domain 485 543 IPR016177 GO:0003677
Seca8g06839 663 CDD AP2 484 544 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06839 Seca-Chr8 163440136 163448082 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06839 364 658 AP2-EREBP Transcription Factor Family AT4G13620 44.918 1.07e-63 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g06839 GST_C 1.3e-05 CL0497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06839 - - gmx:100820013 588.186