Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06832 ATGAGTAATGAGGATCCTGGCTTTTCAGGCAGGCAATACAAAGATATAGTGAGTGTTGGAATTAGTGACAGAATTCCCTTTGATAATGAAATCGACAATATATGTTTACAGACGGGTGAAGAATTTTCTGCTGAGTTCTTACGTGATCGGGTTGCTTTAAGGAGATTTCCTGTCATAACCGATGCAGACCAGCGCCTTCCAAACAGATTGGACTTTAATATTAATAATAATAATTACCAGCTGTCCTATGAGGATCTAAAGCATGTTCTTGGGCTAAGGAGAATGGAGTCTGATAGTAACTCGGATTTGTTGGAGACTACATTAGCTAGAGGATATGTTGCTGAAGTTGACAACAGGGCTTATCCTAATAATTTGAGCAGACACCAGTGTGAGCATGGTGGTATGAGACAAGCATCTGGTACATTTTCCAGACAAATATCAGGTAAGTTTTCTGAAGGGTCTTGTTGTGATCCAGTTACTCCAGGTCCAAATTCTCCATCTATTTACGTCGTTGAGTCTCCTCATTCATGCCATCCTTATGGATCAGTCCTCTCAGACGGTTCTTTCTATAAGAAGATAAAGTTTCTGTGTAGTTTTGGAGGTAGAATACTACCAAGGCCAAATGATGGGAAGCTCAGATATGTGGGTGGAGAGACACGGATTATATCGATCAGGAAGAACATTGCATGGGAGGAACTTATGGGGAAGACTTCTGCTATTTGCAATCAAACTCACATTATCAAATACCAACTTCCAGGAGAGGACCTTGATGCTCTTATTTCTGTTTGTTCTGATGAGGATCTTCATCATATGATCGAGGAGTATGAAGAGCTTGAAAGAGCTGGAGGTTCTCAACGACTGAGGATTTTTCTCATACCTTCAAATGATTCTGAGAGTCCAAGGTCTAATGAAGCAAGAGTCAATCAGCCAAGTGATGCTGATTATCATTATGTCGTGGCTGTTAATGGTATGCTGGATCTTAGTCCACGAAAGAACCCTAGTGGGCTGAGTTTGGCAAACCATACAAGCCAGTTTGGCAATACCTATGATTACAACAGTCCACATTTCCACAGGGACTCAACCACATCTGCATTTGCTTCAGATGCGAAGGATTGCAACCCGACATCATCTACAAATTTGGCAGGCATGCTTTCAAAACCCGGTCCGCAATTTTTAACAACACTGATGGGTTCAGGGAAGTCATTTAATCAAACACCTTCATCTCCCATCTGTGTACAGCCTAAAGATCCTAAAATTTTTAATGTACAGCAATTCAAGGATCAACCGTATAATGTTGTTAATGAAAGCATTATTCCCTTTATGGAAAAGGTTCCACATGACAACACTTTGTATGTAGACAATACTGGTTATGTTGATCCAATTGAATGTTATAACAATCTTGCTCAAGCACCTCCATTTGAGAATTACCATTCTAGTAATCAATATCCACTGGAGTCTGACCAGGTCAGGAAGCCTAGTGATGATTTTCATTTTCATAGACGAAACAATAGTAAAGATTTTGTCTCTCCTGCAATTTATAGTCAAACTGATATGATATCTGAGAGACCTCTAGTTACCAATGAAGGTTCATATCATTTTAACAAGATTGTCTCTCATCCTCATGAGTCATCAAGTTTATTCTTAGTGTCTGATGGTAGAGATGGATCTCAGTACAGAATGTTACATGCACTTTCTGACTCAACACTTCAGGAGAATAATGAAAACTATAAAGCTCGCTTGCAATTTCCCCTTAGTGTAGAGAGAGACAAATTGTCGTCACTGGAAACTTCAAGTTCTTTGGAAGAATGTTCAATACAGCCAGGAGAGATAATTAATGGGAAAGAAAATGTGTCTAAGTATCAAAACTTGCCCACTTTTGGAATGACTGATAATTGCAACCGAGTGTTAGAAATTGATAAAGAGAACTTGCACTGTGCAGATAAAAGCACTGATTGGTTTGATGAAAAAGTTGGAGCAATGTCACAAGATAGACATTTACAGTACATCTACTACCCACACGGGGTTTGTTCATCTTCACCAGATTTACAAAGCAGTAAGTGCAACATATCTGCTGCACCATTTATCTCTTTAGAATCCACAAGAAACATGACAGAGCAACCACAAGGTCTGCCATTAGACATGATTGTTTCTGAGTTTTCCATGAGGAGCCCAAATTCATCAATGCATCACCATTATGCTATGTCGGAGACGAAAGACAGTCAACCACTTCGCCCTGGATCTTTTGATTTACAACCTATTGTGTCCCAAACTGACATAGAGCCTGCACCACATATCTCATATACAGACTTGGTTTCTTCTTCATTAAAAGAGGTTGTTATGCCTGATGAGGATCATGCATGCTACCTGCACCAAAAGGAAGAAAACACAATCATCAACAAACAATCGTCTGAATACATTGATGAATTTTGTGCCAACAAGCCAGAATCAGTAACTGTAGCCAAGGAACCAATTGATTACATTTCTTCTGGTATCCACTCGTGCTTACATGTTATCTCAAATGTAGATGAAGTTGAACCTACATCTCCTGAAAAGGAAGGGGTAGACTGTATTAATTCAGAATCTGAAAGTAAGCTTGCAAAAGCTGATAGTGGAAACTTCAATAAGCTTACTGGTGATACTTCAAACGCTGAGACAGAGGTTGAAATTTATGGTTTACAGATTGTTGAAAATGGTGATCTTGAAGAACTACAAGAGTTAGGATCTGGAACCTTTGGAACTGTTTATCACGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCTCTGGTGGATTGTCAGAGCAAGAGCGGTTGACTAGAGATTTTTGGAGAGAGGCAAAGATTCTGTCAACTCTTCACCATCCAAATGTGGTGGCATTTTATGGGGTAGTTCCAGATGGCCCAGATGGAACATTGGCAACTGTAACAGAATACATGGTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAGGAAAGAGTGCTTGACCGTCGTAAAAGGGTCATGATTGCAATGGATGCAGCCTTTGGCATGGAATATCTACATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTACTTGTCAATCTAGGCGATCCAGAACGGCCTGTATGTAAGGTTGGAGATTTTGGCCTATCAAGAATTAAATGCAACACACTTGTTTCTGGTGGTGTCAGAGGAACCCTCCCATGGATGGCACCGGAATTACTGGATGGTAACAGTTGTAGGGTATCTGAGAAGGTTGATGTTTTCTCATTTGGCATTGCAATGTGGGAAATCTTGACTGGGGAAGAACCGTATGCTAACATGCATTGTGGTGCTATCATAGGAGGTATTGTCAATAATACGCTCAGGCCTCCTATTCCAAAACGGTGTGATTCTGAGTGGAAAAAATTGATGGAAGAGTGTTGGAGTCCTGATCCTGCAGCCAGACCAACCTTCACACAAGTTAAAAACAGACTTCGCAACATGTCAGCTGCACTGCAGAAAAAGAGACATAATATTGGGTATCGATGA 3543 0.4002 MSNEDPGFSGRQYKDIVSVGISDRIPFDNEIDNICLQTGEEFSAEFLRDRVALRRFPVITDADQRLPNRLDFNINNNNYQLSYEDLKHVLGLRRMESDSNSDLLETTLARGYVAEVDNRAYPNNLSRHQCEHGGMRQASGTFSRQISGKFSEGSCCDPVTPGPNSPSIYVVESPHSCHPYGSVLSDGSFYKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNIAWEELMGKTSAICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNDSESPRSNEARVNQPSDADYHYVVAVNGMLDLSPRKNPSGLSLANHTSQFGNTYDYNSPHFHRDSTTSAFASDAKDCNPTSSTNLAGMLSKPGPQFLTTLMGSGKSFNQTPSSPICVQPKDPKIFNVQQFKDQPYNVVNESIIPFMEKVPHDNTLYVDNTGYVDPIECYNNLAQAPPFENYHSSNQYPLESDQVRKPSDDFHFHRRNNSKDFVSPAIYSQTDMISERPLVTNEGSYHFNKIVSHPHESSSLFLVSDGRDGSQYRMLHALSDSTLQENNENYKARLQFPLSVERDKLSSLETSSSLEECSIQPGEIINGKENVSKYQNLPTFGMTDNCNRVLEIDKENLHCADKSTDWFDEKVGAMSQDRHLQYIYYPHGVCSSSPDLQSSKCNISAAPFISLESTRNMTEQPQGLPLDMIVSEFSMRSPNSSMHHHYAMSETKDSQPLRPGSFDLQPIVSQTDIEPAPHISYTDLVSSSLKEVVMPDEDHACYLHQKEENTIINKQSSEYIDEFCANKPESVTVAKEPIDYISSGIHSCLHVISNVDEVEPTSPEKEGVDCINSESESKLAKADSGNFNKLTGDTSNAETEVEIYGLQIVENGDLEELQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFSGGLSEQERLTRDFWREAKILSTLHHPNVVAFYGVVPDGPDGTLATVTEYMVHGSLRNVLLKKERVLDRRKRVMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKCNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVNNTLRPPIPKRCDSEWKKLMEECWSPDPAARPTFTQVKNRLRNMSAALQKKRHNIGYR. 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06832 1180 Gene3D - 211 294 - -
Seca8g06832 1180 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 988 1178 - -
Seca8g06832 1180 PRINTS Tyrosine kinase catalytic domain signature 982 995 IPR001245 GO:0004672|GO:0006468
Seca8g06832 1180 PRINTS Tyrosine kinase catalytic domain signature 1019 1037 IPR001245 GO:0004672|GO:0006468
Seca8g06832 1180 PRINTS Tyrosine kinase catalytic domain signature 1090 1112 IPR001245 GO:0004672|GO:0006468
Seca8g06832 1180 PRINTS Tyrosine kinase catalytic domain signature 1134 1156 IPR001245 GO:0004672|GO:0006468
Seca8g06832 1180 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 893 987 - -
Seca8g06832 1180 SMART PB1_new 207 294 IPR000270 GO:0005515
Seca8g06832 1180 ProSitePatterns Protein kinases ATP-binding region signature. 906 927 IPR017441 GO:0005524
Seca8g06832 1180 Gene3D Phosphorylase Kinase; domain 1 894 987 - -
Seca8g06832 1180 SUPERFAMILY CAD & PB1 domains 208 301 - -
Seca8g06832 1180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1025 1037 IPR008271 GO:0004672|GO:0006468
Seca8g06832 1180 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 212 294 - -
Seca8g06832 1180 ProSiteProfiles Protein kinase domain profile. 900 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06832 1180 MobiDBLite consensus disorder prediction 726 749 - -
Seca8g06832 1180 SUPERFAMILY Protein kinase-like (PK-like) 888 1163 IPR011009 -
Seca8g06832 1180 SMART serkin_6 900 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06832 1180 PANTHER SERINE-THREONINE PROTEIN KINASE 244 1164 - -
Seca8g06832 1180 CDD STKc_MAP3K-like 906 1163 - -
Seca8g06832 1180 Gene3D Transferase(Phosphotransferase) domain 1 988 1178 - -
Seca8g06832 1180 Pfam Protein tyrosine and serine/threonine kinase 902 1163 IPR001245 GO:0004672|GO:0006468
Seca8g06832 1180 CDD PB1_UP2 196 292 - -
Seca8g06832 1180 Pfam PB1 domain 208 292 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06832 Seca-Chr8 163360719 163368905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06832 192 332 MAP Kinase Kinase Kinase AT1G16270 58.741 1.55e-41 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca8g06832 PK_Tyr_Ser-Thr 5.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06832 - - gmx:100810711 1805.8