Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06829 ATGAAGATGATTCCTTGGGGTGGTATCAGTTGCTGTTTGAGTGCTGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCGGAAATTCTTAAATCTGTTACTCGGGTCAATCAGTTGAAGGAACTAGCACAACTGTTAGATACGGATATACTACCCTTGGTTGTTTCAATTTCTGGAAGAGTTGGTTCTGAAACCCCAATTAACTGCGAGTTCAGTGGCTTAAGAGGTGTAATAGTTGAAGAAACAGCTGAGCAACATTTTCTGAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCTTTAATGCTATCCATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGATCGTGTGCATGTAGTTGGAGCTCGTGGCGCCACTGGTTTTGTATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCAGGTCGGTCACTTGTACGTGGAACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGAGTTAAGAGAATTGAACGGGTACTTCCTGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGATATTGGGACCATTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCTAAAACGGTTGATCAACTCATTGCAAATCTCGGGAAATGGGCAAGGTGGTACAAGTATGCTTCTGTGGGATTGACAGTGTTTGGTGCATATCTAATAGCCAAGCATTTTATTCGGTACTTCTTGGAAAGACGGCGCCGCTATGAACTGCAAAAAAGGGTTCTTGCTGCAGCTTCTAAGAGATCAGGACAAGATAATGAAGGTGAAAAGACTGACAGCTTATCAGATGGTGCTAAAAAGGATCGCTTAATGCCAGATTTGTGTGTAATATGCCTCGAGCAGGAATATAATGCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGCTCTTCGCACTTGACCAATTGTCCTCTTTGCCGGCGACAGATAGAGAAGGTAGTGAAGACTTTTCGTCATTGA 1026 0.4415 MKMIPWGGISCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDTDILPLVVSISGRVGSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTDRVHVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTVDQLIANLGKWARWYKYASVGLTVFGAYLIAKHFIRYFLERRRRYELQKRVLAAASKRSGQDNEGEKTDSLSDGAKKDRLMPDLCVICLEQEYNAVFVPCGHMCCCTACSSHLTNCPLCRRQIEKVVKTFRH. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06829 341 FunFam E3 ubiquitin-protein ligase SP1 282 340 - -
Seca8g06829 341 PANTHER - 2 308 IPR044231 GO:0004842|GO:0016567
Seca8g06829 341 Pfam Zinc finger, C3HC4 type (RING finger) 292 335 - -
Seca8g06829 341 CDD RING-HC_LRSAM1 294 337 - -
Seca8g06829 341 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
Seca8g06829 341 Pfam E3 Ubiquitin ligase 87 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Seca8g06829 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 340 IPR013083 -
Seca8g06829 341 SUPERFAMILY RING/U-box 293 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06829 Seca-Chr8 163341701 163349107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06829 3 274 C3H Transcription Factor Family AT1G63900 78.102 2.29e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06829 K15688 - gmx:100803252 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06829 8 163341701 163349107 Seca8g06829 8 163341701 163349107 ECH