Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06815 ATGAACAACTTCCTCTTTCTCTTCCTCCTCACTCTCCCCCTCCCTTCACTCTCCGCAAACGACACCGTTTCTTGCCCTCTCAACTTCACCGTCCTCACTACCCTCAGCGGCGACTCCGCCGGCAGCACGCGGTGCCAGTTCATCAACCAACCCCTCCGTCTCGTTCAATCTGATTACCTCCTCCGCACCGGCTTCTTCGTCCCTCCTCTCAACTCCTCCGAATCATGCTGGAAAGCCTTCCAATCCTACATCAACATCTTCGACCCTACCTTCGACGTTCGCTCCTCCTGTGGCTTCCAAACCAATTGGATCTCCCAGGGTTGCATCAACGTCACCACCAAGCAACAATTCGAAGCACTCGTTCCTCAATCAGCGATTCAGAACATGCGAGCAAATTGTAACCAATCCCTTGGGAATAACTCTCCCTGTGCACTCTGCACCACAAGCATGTCCAGTTTGCCAGCTTTGGGACAATCCATTGGGAACCTCTCAGATTGCACGGGTTATCCTTCTATTTATGCCGCTGCTTTTTCCAATCAATTTGGACCTTCTGACCTTGGCACTGCTAAGTGCTTGTTCTCCCTTGGTTTTGACTCTGGGGGTTCCTCTGCTGCCAAAAGAAAAGTTGTTATTATTGTGGTTGTTTCTGTTGTTTGTGTCTTGGCTTTGTGTGTTGTTGTTGGGTTTTGGGCTTATTGGAAATTGAATGAAAAGATGATGGGGGATAAGGATGTTAATATTGCTGAGGCTGGTTTGGTTTCTAGGTTGGATTCCATGGACCAGAGTACTACTTTGATTAGGTTCACTATTGATGATATTAAGAAGGCTACTAAGAATTTTTCTAGGGATAATATAATTGGGAAAGGGGGTTATGGGAATGTGTATAAAGGGTTGCTGCCTGATGGGAGTGAAGTTGCATTGAAGAGGTTTAAGAATTGTTCAGCTGCTGGGGATGCTAGTTTCACTCATGAGGTTGAGGTTATAGCCAGTGTTAGGCATGTCAACCTTGTTGCTTTGAGGGGTTATTGTTCTGCAACCACTCGTTTAGAAGGTTACCAGAGGATTACTGTTTGTGATTTGATGAACAATGGGAGCCTTCATGATCATTTGTTTGGTTCTACAGGGGTGAAACTCAGTTGGCCAATAAGGCAGAGGATTGCTCTGGGGACAGCTAGGGGGTTGGCTTATTTGCATTATGGGGCTCAACCTGCAATCATCCATAGGGATATTAAGGCAAGTAATATACTTCTGGATGAGAAGTTTGAAGCTAAAGTAGCAGATTTTGGACTAGCAAAGTTTAACCCTGAGGGAATGACACATATGAGCACAAGGGTAGCTGGAACAATGGGGTATGTTGCTCCTGAGTATGCTTTATATGGGCAATTGACAGAGAGAAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAGGAAGGCTCTTCAAATGAACAATGATGGCCAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTGGTTAGGACAGGTAAAGCATTGGATGTTATTGAAGATGGCATGCCAGAACCTGGTTCATCTGAAGTGCTTGAGAAGTATGTGTTGATTGCTGTGCTTTGTTCTCATCCACAGTTGTATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGATGAATTAGTACCCACAATACCGGAAAGGCCAATCCCTCTTGTTGCCGGGAAGCTTGATATTGAGAGATCTGTTAGCAGTAGTGGCTCTGGTCAGCTCTCTAGTCCAACCGGTTATCAAGCATATACATTAGGAAGTGAACACCATTCTTCTAATTCTAGGGAAGAAAGAAGCTCAGGCTCCAGGATTTTGAGTACAGATTGA 1875 0.4539 MNNFLFLFLLTLPLPSLSANDTVSCPLNFTVLTTLSGDSAGSTRCQFINQPLRLVQSDYLLRTGFFVPPLNSSESCWKAFQSYINIFDPTFDVRSSCGFQTNWISQGCINVTTKQQFEALVPQSAIQNMRANCNQSLGNNSPCALCTTSMSSLPALGQSIGNLSDCTGYPSIYAAAFSNQFGPSDLGTAKCLFSLGFDSGGSSAAKRKVVIIVVVSVVCVLALCVVVGFWAYWKLNEKMMGDKDVNIAEAGLVSRLDSMDQSTTLIRFTIDDIKKATKNFSRDNIIGKGGYGNVYKGLLPDGSEVALKRFKNCSAAGDASFTHEVEVIASVRHVNLVALRGYCSATTRLEGYQRITVCDLMNNGSLHDHLFGSTGVKLSWPIRQRIALGTARGLAYLHYGAQPAIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKALDVIEDGMPEPGSSEVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDDELVPTIPERPIPLVAGKLDIERSVSSSGSGQLSSPTGYQAYTLGSEHHSSNSREERSSGSRILSTD. 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06815 624 MobiDBLite consensus disorder prediction 582 605 - -
Seca8g06815 624 CDD STKc_IRAK 286 555 - -
Seca8g06815 624 SUPERFAMILY Protein kinase-like (PK-like) 262 570 IPR011009 -
Seca8g06815 624 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 134 616 - -
Seca8g06815 624 Gene3D Phosphorylase Kinase; domain 1 247 353 - -
Seca8g06815 624 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 242 359 - -
Seca8g06815 624 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524
Seca8g06815 624 Pfam Protein kinase domain 281 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06815 624 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 361 563 - -
Seca8g06815 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Seca8g06815 624 MobiDBLite consensus disorder prediction 582 624 - -
Seca8g06815 624 SMART serkin_6 280 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06815 624 Gene3D Transferase(Phosphotransferase) domain 1 361 561 - -
Seca8g06815 624 Pfam SPARK 21 156 IPR043891 -
Seca8g06815 624 ProSiteProfiles Protein kinase domain profile. 280 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06815 Seca-Chr8 163121517 163123412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06815 16 610 Receptor kinase-like Gene Family AT2G48010 64.333 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca8g06815 Pkinase 5.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06815 - - gmx:100800760 944.88