Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06814 ATGAAGGAAAAGGTGGATTCCCCTATTACAGTGCTTGAGGACTATTTTAGGAGCTCAGATTCAGAATCAAGTTCTTCTAAAGAGCCTACAGTGGATTCTGAGTCTCAAGACATTTCAAAACCTGCTTCTAGATGGCATTCATTTCTTCAATTGTTGAGGAGCAGATCAAAGAAACAGATAGCCACATTGCATCCTCTCAATATCTCCAAAAGAATGAGCAGTAGCATGAGGGAATCCATATTGCCAAGTTGTTTCACAGATGCAACTTTGTCCCCTTGCAGATCACCATGGAAGATCTTCACTCATCATGAAATACAACTTGCAACCAATTATTTTAGCCAAGAAAATTTGATTGGAAAAGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATCATGAGCTAGTAGCAATTAAAAGGCTAATAAGAGGAACAGCTGATGAAGTCATAGGGGATTTCTTATCAGAACTTGGTGTAATGGCACATGTAAACCATCCCAATACTGCTAAACTTGTTGGTTATGGTGTGGATGGGGGAATGTATCTAGTTCTTGAATTGTCTGAAAAAGGAAGCCTAGCTTCAGTGCTTTATGGTTCCAACGAGAAACTACCATGGTGTATTAGGCACAAAATTGCATTAGGAACAGCTAAGGGTGTATTATATCTTCATGAAGGTTGTCAAAGAAGAATCATCCACAGAGATATAAAAGCTGCCAATATATTGCTCACGGAGAACTATGAGCCTCAGATTTGTGACTTTGGGCTAGCAAAATGGCTGCCAGAGAATTGGACACACCACACAGTTGCAAAATTTGAAGGAACTTTTGGCTACCTAGCTCCTGAATACTTGCTTCATGGCATAGTAGATGAGAAAACGGACGTATTTGCCTTTGGGGTACTGTTATTAGAATTAGTCAGTGGGCGTAGAGCACTTGATTATTCACAGCAAAGCCTTGTTTTGTGGGCAAAACCATTGCTAAAAAAGAATGATATTAGGGAGCTTATTGATCCTTCATTAGTTGGTGACTATGACTCTAGGCAGATGAATCTCATGCTCTTGGCAGCTTCTTTATGCATACAACAGTCCTCAATTCGTCGACCCTCTATAAGACAGGTTACCTGGGCTGGTTTTGATAGACTAGAGCTTGATCAATTTATCTTTAAACCCGTTCTTTTACTTGGTTATTTGAACGGATTTCAAGTGCTTGATGTGGAAGATGCCTATAGCTTTAGTGAGCTGGTCTCAAAACGTGACGGGCCAGTTTCTTTCTTACAGATGCAGCCTTTCCCTGTAGGCTCTCATGGCCAAGCCCAGGAGGGATTCAGAAAATCGCATCCTTTACTTCTGGTTGTTGCTGGGGATGACACTGTCCAAAGAAGTGATGGTGAGGTGGAGACTCAATCTGGGAATGGTCTCAACTCTGCTACAGCTGTTCGGTTTTACTCTTTAAAGTCTCATTGTTATGTTCATGTTCTGAGATTTCGATCCATGGTGTGTATGATCAGATGCAGTTCCAAGATAGTAGCTGTTGGTCTTGCCACACAAATATACTGCTTTGATGCATTGACTCTTGAGAATAAATTCAGTGTTCTCACTTATCCTGTTCCTCAGTTAACGGGACAAGGATCCATAGGTGTTAATGTGGGCTATGGTCCAATGGCTGTGGGTCCAAGGTGGCTAGCATATGCTTCCAACAGCCCACTGCCCTCAAATGTAGGATGCATAAGCCCACAGAACCTAAGTCCCTCCCCAGGAATTAGTCCATCAACATCTCCAGGCAGTGGTAGTTTGGTGGCTCGCTATGCAATGGAGTCCGGTAAACATTTGGCTGCTGGAATAATCAGATACTGTCAAGATCTGCTTCCTGATGGTTCTAATTCTCCAGTACCATCAAATTCAGGCTGGAAAGTTGGTAGGGTTACAGGAAATGATATGGATAGTGCAGGAATGGTGATTGTTAAGGATTTTGTTTCCAGAGCTATCATCTCACAATTTAAAGCTCACTCTAGTCCTATATCTGCTCTGTGTTTTGACCCCAGTGGAACCCTTCTGGTCACTGCATCAATGTATGGAAATAATATTAATATCTTCCGGATAATGCCATTGTGTGAAAGCAAGGGTTCAGGGGTTCCAGGCTGTGACTGGAGCTCTTCTCATGTGCATCTTTATAGACTTCATCGTGGAATAACACCAGCTATGATCCAAGACATTTGTTTTAGTCATTTCAGCCAGTGGATTGCAATTGTCTCATCCAAGGGGACTTGTCATCTTTTTGTTTTGTCACCTTTTGGCGGTGATACTGGTTTTCAACTTATCAGTTCTCATGATGAAGAACCCTCCTTACTTCCAGTTTTGTCTCTACCTTGGTGGTCTACTTCATCTTCTATTCCTAATCAGCAATATTTGCCTCCTCCAGCACCTACTGTCCTTTCTGTGGTTAGCCGGATAAAGTATAGCAGTTTTGGATGGCTTAATACCATTCATAATTCTACTGCAAATGTGACAGGAAAAGTTTTTGTGCCATCTGGTGCTATTGCTGCGATTTTTCATAATTCCTTATCTCACTCACAGGAGCCTGTTAACACAAAAACGAAATCCTTGGAGCATCTGTTAATATATACACCATCAGGTCATTTAGTCCAACATGAGCTTCTGCCATCTGTTGGTTCAGAACCAAATGAAAGTGGTTTGAGAAACCAGTCAGCTTCAGCCCTGCATATGCAGGAGGATGAGTTCAGAGTGAAAGTTGAGCCTATTCAATGGTGGGACGTATGTAGAAGGTCAGAATGTCCAGAAAGAGGAGATCCTTCCTGCAATACCTTTGATAGACAAGATGGCATTGATAGAGTTCAAGAGAAAATATATTCTGGTGATGGCTATGGATTGAATTTTGTAAGTAGAAGTGATGGTGTTGGAAAAAAAGAGAAATCTTCTACAAGGAAGCCTCAAGATAAATTTCACTGGTATCTATCTAATGCGGAGGTGCAAGTGAATTTTGGAAGGATGCCAATATGGCAAGAGTCTAAGATTTGTTTCTGCTCAATGAATTCAGTGAGAACTATTTTCAGTGGTGGTGGAGAGTCTGAAATTGAAAAGATATCTGCTAATGAAGTTGAGATAAGACGGAAGGAGTTGTTGCCTGTTTTTGACCATTTTCATAGCATCAGACCAAGCTGGAATGAGAGAAGCCTTCCTGGGGGAAAACATTTGGGCCCTGCTTCTCCAGTTCCCTATCAGGCTGAAGACAAGCAAACTGCTGACGTGACAGTTATTTGCCACTCAAAGCCAGCATCACTGAGCTCCACTGAAAGCTCTGATGGAGCTCCTGTGATGACCTACCCATCAATTTAA 3354 0.418 MKEKVDSPITVLEDYFRSSDSESSSSKEPTVDSESQDISKPASRWHSFLQLLRSRSKKQIATLHPLNISKRMSSSMRESILPSCFTDATLSPCRSPWKIFTHHEIQLATNYFSQENLIGKGGYAEVYKGCLPNHELVAIKRLIRGTADEVIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSNEKLPWCIRHKIALGTAKGVLYLHEGCQRRIIHRDIKAANILLTENYEPQICDFGLAKWLPENWTHHTVAKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIRELIDPSLVGDYDSRQMNLMLLAASLCIQQSSIRRPSIRQVTWAGFDRLELDQFIFKPVLLLGYLNGFQVLDVEDAYSFSELVSKRDGPVSFLQMQPFPVGSHGQAQEGFRKSHPLLLVVAGDDTVQRSDGEVETQSGNGLNSATAVRFYSLKSHCYVHVLRFRSMVCMIRCSSKIVAVGLATQIYCFDALTLENKFSVLTYPVPQLTGQGSIGVNVGYGPMAVGPRWLAYASNSPLPSNVGCISPQNLSPSPGISPSTSPGSGSLVARYAMESGKHLAAGIIRYCQDLLPDGSNSPVPSNSGWKVGRVTGNDMDSAGMVIVKDFVSRAIISQFKAHSSPISALCFDPSGTLLVTASMYGNNINIFRIMPLCESKGSGVPGCDWSSSHVHLYRLHRGITPAMIQDICFSHFSQWIAIVSSKGTCHLFVLSPFGGDTGFQLISSHDEEPSLLPVLSLPWWSTSSSIPNQQYLPPPAPTVLSVVSRIKYSSFGWLNTIHNSTANVTGKVFVPSGAIAAIFHNSLSHSQEPVNTKTKSLEHLLIYTPSGHLVQHELLPSVGSEPNESGLRNQSASALHMQEDEFRVKVEPIQWWDVCRRSECPERGDPSCNTFDRQDGIDRVQEKIYSGDGYGLNFVSRSDGVGKKEKSSTRKPQDKFHWYLSNAEVQVNFGRMPIWQESKICFCSMNSVRTIFSGGGESEIEKISANEVEIRRKELLPVFDHFHSIRPSWNERSLPGGKHLGPASPVPYQAEDKQTADVTVICHSKPASLSSTESSDGAPVMTYPSI. 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06814 1117 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 189 378 - -
Seca8g06814 1117 Pfam Protein kinase domain 113 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06814 1117 SUPERFAMILY Protein kinase-like (PK-like) 89 375 IPR011009 -
Seca8g06814 1117 Pfam WD domain, G-beta repeat 664 692 IPR001680 GO:0005515
Seca8g06814 1117 SUPERFAMILY WD40 repeat-like 478 762 IPR036322 GO:0005515
Seca8g06814 1117 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Seca8g06814 1117 ProSiteProfiles Protein kinase domain profile. 112 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06814 1117 MobiDBLite consensus disorder prediction 14 39 - -
Seca8g06814 1117 Pfam Breast carcinoma amplified sequence 3 806 1048 IPR022175 -
Seca8g06814 1117 Gene3D Phosphorylase Kinase; domain 1 88 186 - -
Seca8g06814 1117 MobiDBLite consensus disorder prediction 1 39 - -
Seca8g06814 1117 SMART WD40_4 717 760 IPR001680 GO:0005515
Seca8g06814 1117 SMART WD40_4 659 699 IPR001680 GO:0005515
Seca8g06814 1117 MobiDBLite consensus disorder prediction 1098 1117 - -
Seca8g06814 1117 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 83 186 - -
Seca8g06814 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Seca8g06814 1117 SMART serkin_6 112 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06814 1117 Gene3D - 584 796 IPR015943 GO:0005515
Seca8g06814 1117 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 371 1109 IPR045142 GO:0006914
Seca8g06814 1117 Gene3D Transferase(Phosphotransferase) domain 1 189 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06814 Seca-Chr8 163094592 163105754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06814 99 378 Trihelix Transcription Factor Family AT1G68690 41.581 1.64e-62 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca8g06814 BCAS3 1.3e-75 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06814 - - psat:127092010 1170.99