Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06807 ATGGAGTTTGCATCAATTGAAGATGCAAAGAACTACTATACAAGGTACGCCAAGAATAGAGGTTTTAGCTTTCGTATGGGTCGTATTACTAAATCAAGAACAAATGGTATGATGATCGGTCAAGAGATCGTTTGTTCAAAGGAGGGATTTCGGCGAAAAAAAGATATGGGAATGGAACATAAAAGCCTTGCACATGATGAAACAAGGGTAGGATGCAAAGCAATGTTATATATAAAGAAAAATGAGGATAGATGGCTTGTTTCTAGATTTGTAAGAGATCATAATCATGAACTATTTTCCCCAAGAAGCTCACAGTTTCTTCGAGTGCATAGAAAGAAAACTCAAGTGCAAAAGAAACTTATTGATGTGCTTGATGATTCTGGTTTGCAGCCTAGTAAAATAACATCTGTCTTGTGTACTGAAAGTGGTGGTATTGATAATGTTGGATTTAGTCAACAAAATGTTATTGATTACTTAAGTGCAAGGAGACAAAAACAATTAGAAAAAGGAGATGCTCAGTTGATGTTATCATATTTTAAGAATTGCCAATTGAAGAATACTGGGTTTTTTTATGCATTTCAAATGGATGCAGAGGGACAGTTAGCAAATTGCTTTTGGGTTGATTCAAGGTCTAGAATAGCATACAAATATTTTGGTGATGTGGTGACTTTTGATCCAACATACTTAACAAATAGATACAAAATGCCTTTTGTTCCATTCACTGGAGTTAATCATCATCAACAATCAATTCTTTTTGGTTGTGCTCTATTATGGGATGAAACTGAAGAGAGTTTTGTTTGGTTGTTAAGCACTTGGTTAGAAGCAATGGGTGGAGTTTCTCCTAAAACTATTATCACAGATCAAGACGCTGCCATCACTAATGCAGTTGCAAGGGTATTTCCAAAGGTCAATCATCATTATTGCATGTGGCACATTGAGAAAAAGGTACCGGAGTACTTGAACTATATCTATCATGAACACAGTGAGTTTAAAAATCAATTTTACAAGTGCATTCACCAATCTGTTAGTATTGAAGATTTTGAATCTGATTGGGAAGCAATGATAGATAAATATGGGTTGCAGGATAATCAATGGCTAAAGAAAATATACTTTGTTCGAAACAAATGGATTCCTGCTTATGTACGACATAATTTTTGTGCCGGAATGTCTACCACCCAAAGAAGTGAAAGCATGAATAAATTCTTTAAGGATTTTTTGAATTCAAGCACTCCATTAAGCAAGTTTGTTACACAATATGAGAGAGCTCTTGATGCACGTTATAACAAGGAAAGGGAGAAGACTTTCAAGACAATGAATTCAAAACCATTTTTGCGAACATTATATCCCATGGAAGAAGAAGCTTCAAAAACTTATACAAGAAAATTGTTTAGGATATTTCAAGATGAATTGGTTGGCTCTCAATTGTTTACTGCAGAGAAAGTTGGATTTTCCACTGAAGTGTCCACATACAAGGTTCATGAAATTTTAAAAGAGAAACCTAACTATTATGTGGATTTTCATGTTATTTCAAAAGAAGCAAGTTGTGGATGTCACATGTTTGAATTTTTGGGCATTCTTTGTAGACATGTATTAGCTGTATTCATAAAGAAAAAGGTCTATTCTCTCCCTTCAAGGTATATTCTATGTCGATGGACCATTAATGCTAAGAAAGAGAAAGTTAAAGGATTGGCAAGTGATGAATTCCAAGAAGGCGACAACAAAGCTTCTAGTACATTATTGTTTAATAGTGTTATGGTTCAATCTCTTGAACTATCTGAAAGAGCTTCACGGTCAGAAAAGCATCATGATGTTGCAATTCAAGGTTTACAAAAGTTAATTGAAGAGCTTGATCTACTAGAAGTTGAAGAGTCAAAGGAAGAGCATGGTAATTCAACAACTCAAGTTATGCCGAAAGTCTCCAACAATGCTATAACTTTGCGTGATCCTCCACTTGTGGCAACTAAAGGGCGTCCACGAACTTTGCGAATGAAAGGTAGCTTAGAATTGATCAAGAAAGGTTCCTCTACTTGTAGTTATTGTAAGAAAAAAGGCCATAACAAACGTAAATGTCCAAGTTTAAATCAAGCAAGGTGTGATATTATTAATGGTGAAATTCCAGACTCTAATGTTGAAGCTTCTAATTTGGTTGAGTCAAAGGTAATAACATTATTGTTTTATTTGCAATCCTTTATAATTACTATTTTTATCCTAACAATAATTTTGTTACTACTTTATATTGTAGGAAATTGTGGAGGCATAGTAACCACTTCTAGCAAGGTCTCAATATTAATGGTGCAGAGGATGTTATCTTACAACTACTTTGACATCATACTATGTTCTTATACATTCTGA 2352 0.3435 MEFASIEDAKNYYTRYAKNRGFSFRMGRITKSRTNGMMIGQEIVCSKEGFRRKKDMGMEHKSLAHDETRVGCKAMLYIKKNEDRWLVSRFVRDHNHELFSPRSSQFLRVHRKKTQVQKKLIDVLDDSGLQPSKITSVLCTESGGIDNVGFSQQNVIDYLSARRQKQLEKGDAQLMLSYFKNCQLKNTGFFYAFQMDAEGQLANCFWVDSRSRIAYKYFGDVVTFDPTYLTNRYKMPFVPFTGVNHHQQSILFGCALLWDETEESFVWLLSTWLEAMGGVSPKTIITDQDAAITNAVARVFPKVNHHYCMWHIEKKVPEYLNYIYHEHSEFKNQFYKCIHQSVSIEDFESDWEAMIDKYGLQDNQWLKKIYFVRNKWIPAYVRHNFCAGMSTTQRSESMNKFFKDFLNSSTPLSKFVTQYERALDARYNKEREKTFKTMNSKPFLRTLYPMEEEASKTYTRKLFRIFQDELVGSQLFTAEKVGFSTEVSTYKVHEILKEKPNYYVDFHVISKEASCGCHMFEFLGILCRHVLAVFIKKKVYSLPSRYILCRWTINAKKEKVKGLASDEFQEGDNKASSTLLFNSVMVQSLELSERASRSEKHHDVAIQGLQKLIEELDLLEVEESKEEHGNSTTQVMPKVSNNAITLRDPPLVATKGRPRTLRMKGSLELIKKGSSTCSYCKKKGHNKRKCPSLNQARCDIINGEIPDSNVEASNLVESKVITLLFYLQSFIITIFILTIILLLLYIVGNCGGIVTTSSKVSILMVQRMLSYNYFDIILCSYTF. 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06807 783 SUPERFAMILY Retrovirus zinc finger-like domains 671 695 IPR036875 GO:0003676|GO:0008270
Seca8g06807 783 PANTHER OS01G0519700 PROTEIN 1 698 - -
Seca8g06807 783 SMART 26again6 513 540 IPR006564 GO:0008270
Seca8g06807 783 Pfam MULE transposase domain 221 315 IPR018289 -
Seca8g06807 783 Pfam SWIM zinc finger 511 537 IPR007527 GO:0008270
Seca8g06807 783 ProSiteProfiles Zinc finger SWIM-type profile. 502 538 IPR007527 GO:0008270
Seca8g06807 783 Pfam FAR1 DNA-binding domain 11 99 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06807 Seca-Chr8 163002162 163004637 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g06807 MULE 5e-32 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06807 - - psat:127094135 1037.33