Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06805 ATGGGGTCGAAGCCGTGGCTGTACCCCGCTTCCAACTATCGAACTCTAGAAAGCTACTGGGATACCGACGAAGACGCGCCTGGTCCTCGTTGTGCCCACACGCTCACTGCCGTCGCCGCCACCAAGACCCGTGGTCCACGCTTAATCCTCTTCGGCGGTGCCACTGCCATTGAAGGAGGATCTTCCTCAGCTCCCGGCATTCGATTAGCGGGAGTCACGAATTCCGTCCATTCATATGACGTTCAAACAAAAAAATGGACTAGGATTAAGCCTGCCGGAGAGCCGCCCTCTCCTCGGGCTGCCCATGCTGCTGCTGCAGTTGGCACCATGGTCGTTTTCCAGGGTGGGATAGGTCCTGCCGGACATTCTACTGATGATCTCTATGTGCTTGACTTGACCAATGATAAATACAAATGGCACAGAGTCGTTGTACAAGGGCAAGGACCCGGGCCTCGCTACGGCCATGCAATGGACTTGGTTGCTCAGAGATATCTTGTTACTGTCAGTGGAAATGATGGTGAGGGAAATTCAGTGGTAGGGAAACGTGTTGTATCTGAGGCTTGGGCTTTGGATACTGCTCAAAAACCTTATGTGTGGCAGAGGCTGAACCCAGAAGGTGATAGACCTTCTGCTAGAATGTACGCGACTGCTAGTGCCCGCTCAGATGGAATGTTTTTACTCTGTGGTGGAAGAGACTCTTCTGGAGCTCCGCTCGCAGATGCCTATGGACTGCTCATGCATAGGAATGGTCAGTGGGAATGGACCCTTGCACCTGGAGTTTCCCCTTCACCAAGGTATCAACATGCTGCGGTCTTTGTTGGTGCACGGTTACATGTTACAGGTGGTGTTCTCAGGGGTGGACGGGCTGTGGAAGGTGAAGCATCCATTGCAGTATTGGACACTGCTGCTGGGGTTTGGTTGGACAGAAATGGCATCGTCTCCTCCTCACGCTCAAATAGAAGTCATGATTATGACCCTTCTCTGGAGCTTATGCGTCGTTGTCGCCATGCAGCTGCGGCTGTTGGTGTTCAAATTTATATCTATGGTGGTCTTAGAGGAGATACACTACTAGATGATTTCTTAGTGGCTGAAAATTCACCAATTCAACCTGATGCTAATTCTCCTATGTTAACTGCTGAAAGAGCTTCGCCTGTTACAAGTCCCAAACAGAATCAGTCTAACTTCAATTATAATGTAACGACACCAAGTTTGGATGGTGGACCAGGCATTCCCTCGTCTGGTGGCTCAGGCATGGACAAAAATTCCATGGAGAAACTGAGGGAGGCATCAGCTGCTGAAGCTGAGGTAGCGAGTGCTGTCTGGCAAGCTGTGCAGGCTATATCAAGTAGTCCTGCTGAAGAGACATCTGTATCAGATGACAACTCACAAGCTGCAGAAACAGTTTCAGATGGAAGTGACACAGAGGGAGATGTTCGCCTTCATCCTAGAGCTGTTGTAGTTGCTAAAGAGGCTGTAGGTAATCTAAGTGGAATGGTGAGACAATTGTCGCTGGATCAATTTGAAAATGAAAGTAGACGCATGGTTCCCATGAATAATGATTTGCCATATCCTACAAAAAAATTCACTAGGCAGAAATCCCCTCAGGGTTTGCATAAAAAGATAATTTCAACTTTGCTTAGGCCTCGCAACTGGAAAGCTCCTGCAAACAGGCGATTCTTCTTGGATTCTTATGAAGTGGGAGAGCTTTGCTATGCTGCTGAGCAAATATTTATGCACGAACCAACCGTTCTTCAGCTAAAAGCTCCTGTCAAAGTATTTGGTGATCTTCATGGCCAGTTTGGTGATTTGATGCGGCTATTTGATGAATATGGATTTCCATCAACTGCAGGAGACATCACGTATATTGACTACCTGTTTTTGGGAGATTATGTTGATCGAGGACAGCACAGCTTGGAAACCATTACCTTGCTACTTGCTCTTAAGATCGAATATCCTGAGAATGTTCACTTGATACGTGGAAACCATGAAGCTGCTGACATAAATGCACTGTTTGGTTTTCGTATAGAGTGCATTGAAAGAATGGGAGAAAATGATGGAATATGGGCATGGACACGATTCAATCAACTTTTTAACTATCTTCCACTAGCTGCTCTTATTGAAAAGAAAATTATCTGTATGCATGGTGGCATTGGAAGGTCTATCCATTCAGTAGAACAGATAGAGAAGCTTGAAAGGCCCATAACAATGGATGCAGGATCTATTATTTTAATGGACCTTTTATGGTCTGATCCCACAGAAAATGATAGTGTAGAGGGTTTGAGACCAAATGCTAGAGGGCCAGGGCTTGTCACTTTTGGGCCTGATCGTGTGACGGACTTCTGTAAGAAAAATAAATTACAGCTCATTATAAGGGCCCATGAATGTGTCATGGATGGTTTTGAGCGATTTGCCCAGGGACAATTAATCACACTTTTTTCTGCAACTAACTATTGTGGAACTGCAAACAATGCGGGAGCTATACTAGTAGTTGGTAGGGGTTTGGTTGTGGTTCCGAAATTAATTCATCCCATACCACCTCCCCTTCAGTCTCCCGAGACATCTCCTGAGCGAGTCATGGATGAGACATGGATGCAGGAGCTTAATATTCAGAGGCCACCAACTCCTACTCGGGGTCGACCACAGCCTGACCTTGACCGTGGCTCACTAGCATATATATAA 2679 0.4666 MGSKPWLYPASNYRTLESYWDTDEDAPGPRCAHTLTAVAATKTRGPRLILFGGATAIEGGSSSAPGIRLAGVTNSVHSYDVQTKKWTRIKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHAMDLVAQRYLVTVSGNDGEGNSVVGKRVVSEAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRAVEGEASIAVLDTAAGVWLDRNGIVSSSRSNRSHDYDPSLELMRRCRHAAAAVGVQIYIYGGLRGDTLLDDFLVAENSPIQPDANSPMLTAERASPVTSPKQNQSNFNYNVTTPSLDGGPGIPSSGGSGMDKNSMEKLREASAAEAEVASAVWQAVQAISSSPAEETSVSDDNSQAAETVSDGSDTEGDVRLHPRAVVVAKEAVGNLSGMVRQLSLDQFENESRRMVPMNNDLPYPTKKFTRQKSPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPIPPPLQSPETSPERVMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI. 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06805 892 SUPERFAMILY Metallo-dependent phosphatases 542 853 IPR029052 -
Seca8g06805 892 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 8 892 - -
Seca8g06805 892 Gene3D - 176 364 IPR015915 GO:0005515
Seca8g06805 892 Pfam Calcineurin-like phosphoesterase 589 796 IPR004843 GO:0016787
Seca8g06805 892 MobiDBLite consensus disorder prediction 379 407 - -
Seca8g06805 892 MobiDBLite consensus disorder prediction 867 892 - -
Seca8g06805 892 FunFam Serine/threonine-protein phosphatase 202 370 - -
Seca8g06805 892 ProSitePatterns Serine/threonine specific protein phosphatases signature. 658 663 IPR006186 GO:0016787
Seca8g06805 892 Gene3D - 522 864 IPR029052 -
Seca8g06805 892 MobiDBLite consensus disorder prediction 450 470 - -
Seca8g06805 892 Pfam Galactose oxidase, central domain 45 106 - -
Seca8g06805 892 Pfam Galactose oxidase, central domain 115 157 - -
Seca8g06805 892 MobiDBLite consensus disorder prediction 450 479 - -
Seca8g06805 892 FunFam Serine/threonine-protein phosphatase 9 199 - -
Seca8g06805 892 FunFam Serine/threonine-protein phosphatase 526 865 - -
Seca8g06805 892 MobiDBLite consensus disorder prediction 368 425 - -
Seca8g06805 892 PRINTS Serine/threonine phosphatase family signature 725 752 IPR006186 GO:0016787
Seca8g06805 892 PRINTS Serine/threonine phosphatase family signature 785 805 IPR006186 GO:0016787
Seca8g06805 892 PRINTS Serine/threonine phosphatase family signature 589 616 IPR006186 GO:0016787
Seca8g06805 892 PRINTS Serine/threonine phosphatase family signature 624 651 IPR006186 GO:0016787
Seca8g06805 892 PRINTS Serine/threonine phosphatase family signature 695 721 IPR006186 GO:0016787
Seca8g06805 892 PRINTS Serine/threonine phosphatase family signature 657 681 IPR006186 GO:0016787
Seca8g06805 892 PRINTS Serine/threonine phosphatase family signature 807 823 IPR006186 GO:0016787
Seca8g06805 892 PIRSF STPPP_BSU1 1 892 IPR012391 GO:0004721|GO:0009742
Seca8g06805 892 Pfam Serine-threonine protein phosphatase N-terminal domain 540 587 IPR031675 -
Seca8g06805 892 Gene3D - 7 175 IPR015915 GO:0005515
Seca8g06805 892 SMART pp2a_7 561 845 IPR006186 GO:0016787
Seca8g06805 892 SUPERFAMILY Galactose oxidase, central domain 43 363 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06805 Seca-Chr8 162979744 162993888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06805 590 788 Calmodulin-binding Proteins AT5G63870 33.043 6.03e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06805 K01090 - gmx:100805538 1664.05