Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06799 ATGCTTCCAAAGAGTGTTTCTGAAGATGAAGTCTCTGCTCTTTTCTCCAAGTATGGAACAATAAAGGATTTACAGATTTTGAGAAGTCCCCAGCAAACAAGTAAAGGATGTGCATTTTTGAAGTACGAAACCAAAGAACAGGCCCTTGCTGCTCTCGAGGAAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTGGTTGTCAAATGGGCGGATACCGAAAAAGAAAGACAAGCTCGAAAGGCTCAGAAAGCACAATCCCAAGTTTCCAATGTGCCACATGATGATTCTCAACACGCCTCATTATTTGGAGCCTTACCAATGGGTTATGTTCCCCCATATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGTCTCATGCCGTACCGTTATGCACCAATGCAGAATCAACCGGGTTTCCATAATATGATGCCTTACATGAACCAAGGAAATACATTGCGGCCTGATCTTGGTCGCAATATGAATCCTAGAAATTATCCTGTGCCTCCTATAAGTTACGTTGCCTCTTATTCTGCTGTGCCAGGTTTACAGCATCCAATGGCATACCCTGGAGGAATGATTAGTCCAAGGCCTGTGAGTAATTCTCCGGGTTCTGTTTCACCTGCTGGTGGGAATTACAACTCTGCTATATCTTCAGGCAGCACTAAAAATTCTGGTGGTCAGGTTGAAGGACCACTTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGATCAAGAACTTGCAACTGCATTTCAACCGTTTGGTACAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCAACTGGTGTAAGCAAATGTTTTGGATTTGTTAGTTATGATACTCCAGAAGCTGCTCAAGCTGCCATTAGTATGATGAATGGTCGCCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGATAATAACAAACAGAGTAAGCCTTGCTGA 975 0.4195 MLPKSVSEDEVSALFSKYGTIKDLQILRSPQQTSKGCAFLKYETKEQALAALEEINGKHKMEGSSVPLVVKWADTEKERQARKAQKAQSQVSNVPHDDSQHASLFGALPMGYVPPYNGYGYQAPGGYGLMPYRYAPMQNQPGFHNMMPYMNQGNTLRPDLGRNMNPRNYPVPPISYVASYSAVPGLQHPMAYPGGMISPRPVSNSPGSVSPAGGNYNSAISSGSTKNSGGQVEGPLGANLFIYHIPQEYGDQELATAFQPFGTVLSAKIFVDKATGVSKCFGFVSYDTPEAAQAAISMMNGRQLGGKKLKVQLKRDNNKQSKPC. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06799 324 MobiDBLite consensus disorder prediction 203 231 - -
Seca8g06799 324 Gene3D - 1 84 IPR012677 -
Seca8g06799 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 316 IPR000504 GO:0003723
Seca8g06799 324 SMART rrm1_1 2 71 IPR000504 GO:0003723
Seca8g06799 324 SMART rrm1_1 239 312 IPR000504 GO:0003723
Seca8g06799 324 PANTHER RNA BINDING PROTEIN 1 317 - -
Seca8g06799 324 SUPERFAMILY RNA-binding domain, RBD 2 319 IPR035979 GO:0003676
Seca8g06799 324 CDD RRM3_CELF1-6 240 312 - -
Seca8g06799 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 310 IPR000504 GO:0003723
Seca8g06799 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 60 IPR000504 GO:0003723
Seca8g06799 324 Gene3D - 216 323 IPR012677 -
Seca8g06799 324 FunFam RNA-binding protein BRN1 205 315 - -
Seca8g06799 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06799 Seca-Chr8 162924235 162928652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06799 2 81 Eukaryotic Initiation Factors Gene Family AT1G22760 36.250 5.21e-09 55.5