Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06790 ATGAGAACAGAGTGCACGCTCCCCACGCTTCAAATCCAACGCCCACAGTCAGGGTCAAGTCAACGAGGAGGAGTGCCAAATATGGTAACTACCAACACAGCATTAGGAATGCCAAATACACGTGTCGCAACACTACAGGCTCTTGGTGTTGGTGATAAATATATATCCATGAAAACAGTGAGGAAGAGGATGGCTGAAATGATAAAGAATCAACCGTCACACTGTTGGTGGCTTGACAACCACAGCACCACTAAACGATCCCCATGGCTCCAATCCACACTCAATGAGCTAAATGAGAAGACAAAGGGAATGTTAAAATTAATTGAAGAAGATGCAGATTCCTTTGCCCAACGTGCTGAGATGTATTACAAGAAGAGGCCAGAGCTTGTGAGCATGGTTCAAGATTTCTATAGGACACACCGTTCTTTAGCTGAGAGATATGATCAAGTCAAACCTGACACTGGAATTCGCCTCCTCAAGACAGGGGAATCCCATTTTGCTTCATCAAAGTTTCATCAATCAGACAAGTTGATGAGTTTTGCTGATAATAAAGGTTATGATAGCTATTCTGAAAAATGTGATTTAGAAGAGTCTGTGGAATCTGAAGTTGATTATCTTGAGCAAGAAAAAGAAGAGGGTACCAAATTTGATAACAATAAAGAAAAGAAGGAAGTTCAGGTTGTGGCTGCAAATGATGAAGTACTGAAGAGTCTGAGGGAAGAAATTGAGAGACTCAATGAAGAGAACAAGGCTCATAAGGATCAGATCAAGCAGATAGATAACATTCGTGATGAAGTAATGATGTTGAGGGAAGAAATAGAAATACTCAGAGAAGAGAATAAAGAGCAGAAGGATGAACTCAAGCTGAAAGATACAATTTGTGATGAAGTAATGGTGTTAAGGGAAGAGATAGCAAGAGTCAGAGAAGAGAATATGGCACAAAAGGATTGTCTCAAGGAGAAAGATGTAGAGAAAATAGAGGTGATAAGACACTTGAGTGTAGCAATAGATTTGCTGAAGCAGGAGAATGTAAAGATGAGAAGCTTTATTACTACCAAGAAATGGAAGAATCCCTTTGAGTTCAACAAACTCATTAAAGCATTCTCTAGGAAGTTGTTTCATCCAAGGAATCAGCCTAGTATGAACTTACCTGAGTATCCTAGAAATCTTATATACAAAACAAAAATGTTCCTGCCTCTCTTAGATCTCTTTTGGATTCGCCGTTGCCAACAAGCTTCTTCTTTTGGCTCCTTCCTGCTGATACCAGTGGCAGAAGGTGTTATTGTGACTATGGGTTTCAATTCTAGCTCTACTGTGGTGGTGAGGTTATCATTGTCCGAAGAAAATTCCCCTGTGCATGCCCTTACTCTGTTTGTGCTTCTTCTTTGTGCTTGTATTATCATTGGTCATCTTCTCGATAAGAGTCGATGGATGACTGAGTCAGTCATTGCCCTCATCATTGGCCTTGTTGCTGGAAACTTTATTATATTCGCAACTGGGTTAGGGCATTCACGCATCTTAGTATTCGATGAACAGCTTTTCTTTGCGTATCTTCTTCCACCCATCATTTTTAATGCAGGGTTCCAGGTGAAAAAGAAGCGATTTTTTCGAAACTTCTTGGCAATTATTTCATATGGTGTTCTAGGGACCCTAATAATGTTTCTCATTGTTTCACTGGACGACGGGGTGGACGAATCAACGAAGAAATACATGTCGTGGACAAAGATTGTTCAGTCTCACAAGAAATATGACTTTGGTTTTTGGGGCTCCTTCATCTATTCGTCTTTACTCTTACGACTTAAGCCCTCGTTTGGTGAAGGGGAAGTAGCAAGAAATGAAATTGTGGGCCGAGAAATGGTGGAGAAATGTCTTCTCAAGCGGGAAGAGCGAAGAAATAAACCCTTTGCAAAAGATTGA 1917 0.4053 MRTECTLPTLQIQRPQSGSSQRGGVPNMVTTNTALGMPNTRVATLQALGVGDKYISMKTVRKRMAEMIKNQPSHCWWLDNHSTTKRSPWLQSTLNELNEKTKGMLKLIEEDADSFAQRAEMYYKKRPELVSMVQDFYRTHRSLAERYDQVKPDTGIRLLKTGESHFASSKFHQSDKLMSFADNKGYDSYSEKCDLEESVESEVDYLEQEKEEGTKFDNNKEKKEVQVVAANDEVLKSLREEIERLNEENKAHKDQIKQIDNIRDEVMMLREEIEILREENKEQKDELKLKDTICDEVMVLREEIARVREENMAQKDCLKEKDVEKIEVIRHLSVAIDLLKQENVKMRSFITTKKWKNPFEFNKLIKAFSRKLFHPRNQPSMNLPEYPRNLIYKTKMFLPLLDLFWIRRCQQASSFGSFLLIPVAEGVIVTMGFNSSSTVVVRLSLSEENSPVHALTLFVLLLCACIIIGHLLDKSRWMTESVIALIIGLVAGNFIIFATGLGHSRILVFDEQLFFAYLLPPIIFNAGFQVKKKRFFRNFLAIISYGVLGTLIMFLIVSLDDGVDESTKKYMSWTKIVQSHKKYDFGFWGSFIYSSLLLRLKPSFGEGEVARNEIVGREMVEKCLLKREERRNKPFAKD. 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06790 638 Coils Coil 228 293 - -
Seca8g06790 638 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 73 154 IPR011684 GO:0003779
Seca8g06790 638 Pfam KIP1-like protein 76 148 IPR011684 GO:0003779
Seca8g06790 638 Pfam Sodium/hydrogen exchanger family 459 558 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca8g06790 638 PRINTS Na+/H+ exchanger signature 527 541 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06790 638 PRINTS Na+/H+ exchanger signature 542 550 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06790 638 PRINTS Na+/H+ exchanger signature 513 524 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06790 638 PANTHER PROTEIN NETWORKED 4A 70 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06790 Seca-Chr8 162859861 162866710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06790 445 559 Antiporters AT3G06370 59.130 1.87e-38 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06790 - - lja:Lj5g3v1669350.2 405.216