Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06788 ATGCAATGTGTGTGCGCCGAGACTTTTGAATTTCCAATCCATCCACGTTGCCCTCGCCTCATTTATTACTATTATATTCTCCTCGATCTCTTCTCTTCTCTTCTCCTTTATTTCTCACCCTTCACTTTTCCTTCTCTTTTGGTTTCGTCCTTCCCAACAAGCGATTTCTTTGGCTCCTTCCTGTTCCTGCTACCAGATCCTATGGGTTTCAATTCCAGCTCTAATGCGGTGATGAGGTTAGGGTTATCTTCATCCCAAGAAAATCCCTCTGTGTATGCCATTACTCTATTTGTGGTTCTTCTTTGTGCTTGTATCATCATTGGCCACCTACTCGAAAAGAGTCGATGGTTGACTGAATCAGTCATTGCCCTCATCATTGGCCTTGTTGCCGGAAACATAATTCTATTCGCGACTGGGAGGAGGCGTTCACACGTTTTGGTATTCAATGAAAAGCTTTTCTTTGTATATCTTCTTCCACCCATCATATTTAATGCCGGGTTCCAGGTGAAAAAGAAGCAATTTTTTCGGAACTTTTTGGCAATAATTTTGTATGGTGTTGTTGGGACCCTAATGTCGTTTCTCGTTGTATCACTGGGTATGTTCACACCTTATCTATGTAGACATCTTGGATATGGTATGAAAAGCAATCTATGTTATGAGTCTTTTCTCCTAAAGTTTACAGATCGTTCATTTCTGTTGTTCGAAAAATTGGGCATTGATTCACTGGACTTGGGTGACTATTTAGCACTTGGTGCAGCATTTTCAGCTACAGGTTCTGTCTGCACATTACAGGCGCTTAATAAGGAAGAGACACCTCTTCTGTACAGTTTAGTTTTTGGTGAAGATGTGGTCAATGATGCCACATCTGTGGTTCTTTTCCATGTAATCCAAGGATTTGACCTCGCAAACATCACCTGGGCCAATGCCAGGCAGCTTGTGGAAAATTTTTTTGGTTTATTCGTGACAAGCACTTTGCTGGGAGTAGCTGTTGGCTTGCTTAGTGCTTACATTATAAAGAAGTTCTATTTTGGCAGCTATAACTCTATAATACCTCCATATGCGGTGGCAGGCAAGCCTTTCAGAAAGGCTTGCCGTGACCTTTCAATACCCCCTTAA 1116 0.4185 MQCVCAETFEFPIHPRCPRLIYYYYILLDLFSSLLLYFSPFTFPSLLVSSFPTSDFFGSFLFLLPDPMGFNSSSNAVMRLGLSSSQENPSVYAITLFVVLLCACIIIGHLLEKSRWLTESVIALIIGLVAGNIILFATGRRRSHVLVFNEKLFFVYLLPPIIFNAGFQVKKKQFFRNFLAIILYGVVGTLMSFLVVSLGMFTPYLCRHLGYGMKSNLCYESFLLKFTDRSFLLFEKLGIDSLDLGDYLALGAAFSATGSVCTLQALNKEETPLLYSLVFGEDVVNDATSVVLFHVIQGFDLANITWANARQLVENFFGLFVTSTLLGVAVGLLSAYIIKKFYFGSYNSIIPPYAVAGKPFRKACRDLSIPP. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06788 371 Pfam Sodium/hydrogen exchanger family 98 341 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca8g06788 371 Gene3D - 244 294 - -
Seca8g06788 371 PANTHER SODIUM/HYDROGEN EXCHANGER 83 346 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Seca8g06788 371 PRINTS Na+/H+ exchanger signature 251 261 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06788 371 PRINTS Na+/H+ exchanger signature 152 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06788 371 PRINTS Na+/H+ exchanger signature 166 180 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06788 371 PRINTS Na+/H+ exchanger signature 181 189 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06788 Seca-Chr8 162845277 162851411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06788 85 348 Antiporters AT3G06370 56.061 1.77e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06788 - K14724 jre:108992150 302.753