Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06787 ATGTCGTTTAGGAGCATCATTCTGGATAGGAAGGGATTTGAGGTGAAGTTTGGGTATGGTTTGAGATCAAGGTCACATTCACACAGTGATGTTATTGCTCAGGATAGTTCATTGGTGCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCCCCAGAGCTTTTGAGGGATGTCCTCATGAGGATTGAGGCCTCTGAAGATACATGGCCTGCCCGGAAACACGTCGTTGCCTGTGCTGGTGTTTGCCGTAGTTGGAGAGAAATCATGAAGGAAATTGTCAAACCTCCTCAATTATCCAGCAAGTTGACATTTCCTATCTCCGTGAAGCAGCCTGGTCCAAGGGACTCTCTTATTCAGTGCTATATTAAACGAAATCGCAGTAGTCAAACATATCATCTGTTTCTTGGTTTAAACCAAGCCTCGACTGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGCCGACATGCAACCCACACAGACTATATCATCTCTCTTAACTATGATGATGTATCAAGAGGGAGTAGCACCTATATTGGGAAGTTGAGATCAAACTTTCTGGGTACCAAATTCACTGTGTATGATGCACACCCTCCAATTTATGGAGCCAAAGGTACAAAGTCTCGCACCACCAGGCTAGTTAGTCTCAAGCAGGTGTCTCCAAGAATTCCTGCAGGCAACTATCCCATTGTGCATGTCTCGTATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCACCAATACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCAATCCCATTCTTCAGATCAAAGTCAACCCGCATGGAGAATCATGAATCAATGCCTTTGACTTGTCAAAATGAGGGGACACTGGTATTGCGAAACAAGTCCCCTAGGTGGCATGAACAACTCCAATGCTGGTGTCTGAACTTCAATGGACGAGTGACAGTAGCTTCAGTTAAAAATTTCCAGCTGGTTGCATCTCCTAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTTCAGTTTGGAAAAGTTGGAAAGGATGTATTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1203 0.4447 MSFRSIILDRKGFEVKFGYGLRSRSHSHSDVIAQDSSLVLDGLKQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACAGVCRSWREIMKEIVKPPQLSSKLTFPISVKQPGPRDSLIQCYIKRNRSSQTYHLFLGLNQASTDDGKFLLAARKCRHATHTDYIISLNYDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGAKGTKSRTTRLVSLKQVSPRIPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPIQTQFLHSRIDTSPSIPFFRSKSTRMENHESMPLTCQNEGTLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06787 400 CDD F-box_AtTLP-like 48 92 - -
Seca8g06787 400 Pfam F-box domain 48 94 IPR001810 GO:0005515
Seca8g06787 400 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Seca8g06787 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Seca8g06787 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Seca8g06787 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
Seca8g06787 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Seca8g06787 400 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Seca8g06787 400 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Seca8g06787 400 FunFam Tubby-like F-box protein 105 400 - -
Seca8g06787 400 SUPERFAMILY F-box domain 42 91 IPR036047 GO:0005515
Seca8g06787 400 ProSitePatterns Tub family signature 2. 385 400 IPR018066 -
Seca8g06787 400 Gene3D Tubby Protein; Chain A 105 400 IPR025659 -
Seca8g06787 400 PANTHER TUBBY-RELATED 32 398 - -
Seca8g06787 400 SUPERFAMILY Tubby C-terminal domain-like 97 400 IPR025659 -
Seca8g06787 400 Pfam Tub family 109 395 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06787 Seca-Chr8 162824295 162827805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06787 1 400 TUB Transcription Factor Family AT2G47900 73.301 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca8g06787 Tub 3e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06787 K19600 - gmx:100809257 756.903