Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06784 ATGAGTGGTTCTCCAAATCCAAATCCAAAACACCAAGATGCTGAAGCTCCACAACTACACAGAACATGTGACAATTGTGGGGACTCCACGCCTCTCTTGTACTGCAAAGCTGATTCTGCCAAGCTCTGTTTCTCTTGTGACCGTGTTGTTCATTCCACCAACCAGCTTTTCTCCAAGCACACTCGCTCTCAGCTCTGTGATGCTTGTGGTGATGCCCCTGCCACAATCCTCTGTTGTGATGAAAACTCTGTTCTGTGTCAGAACTGTGACTGGGAAAGCCACGACAACAACCTCTCCGTGCACCAAAGGAGGCCCCTTGAGGGATTCTCCGGGTGCCCTTCTGTGACTCAACTCTTAACAATTGTGGGTCTAAGCGAAAAAACTCTTCTTTCAAATGAGGGAAGTTCTGAGATTGAAGAAGGACTCTCGGATTTGGTTGTGTGGGAATCTCGTTCTGTTTTTGGTCTTGACGATTTGATTGCTTCAACTGATTCTTCACATAATTATCATGCTATGCCGGTTCCTCCTCTTCATAAGAAACATAAAGCTGCTTGCGGGAGACAGAAAGAAGAAATTGTTAAGCAGCTCCGTGAACTAGCAAAGTCAGAGCCCGGCTTGATTTATGGAAATGCAGATGCTGAACAACACATGCAATCAGGAAATTTGTCTACTGGTTATGAACGTGACATAGAGGCTCATATATTTCCTTCATACGGGGCTGAGACAGGTGTTTTTTGGTGGCAAAGAGAAAGCAGTGATCCTGCAAATCAAGTAGTTCCTTCTGATACGTCCCTCAGAACTTATGGCGACCAAGTCCCACCTAATGATCGAATTGTCTCTGGGAATCATGCCAATGGTAATAACGAAGGGAAACCATCAAATTCTTTTAACGCTGAAACCTTGTCTATTACTCCTAAAGCTACTCCATATGAGTTAACAAGTCAAGAAAGAGATTCAGCATTATTACGGTACAAAGAGAAGAAGAAAACAAGAAGATATGACAAGCACATTAGATATGAATCAAGAAAAGTTCGGGCGGAAAGCAGGATAAGAATTAAGGGAACCTATGACTTAGGTTGGAATTGGATTGTTGATAATGTCACTCAAATTTGTTCATGCTATGCAGCTGCAGGGTTCACAATTGTTCGTTGTCCTCTTCAATCCCCAATTCCTGTGCTGAACTCCACAGTCTGCAGAGAAGCAATGAAGAAGAATGAGGAACTCAGGGAGCATTTCAACAAGGAAAAGAAAAAGAAGATAACGATGAAGAAGAACATGGCGAGGTTGGGCGGGAACGGGCTTTCGCTCGACGCTTTCGCCAATGCTAAATCGAAGAACAATCATTATAACCCATCCATCATAAAGAAACAAAGGGAGTTTTATAAGAATGCTAAGAATGTGAATAGGTTTAAGAAGATGTTGAAGCAGCAAAACCCGGGGAACCATCAGTGCTCAGCCCAGGATCTGATTGAGAATGAGGACGAAACTAAAGAGGACAAGGACATGGGTGATAAGAGGAAGAAGAAGAAACACAGTGCCTTTAGTTTGGAAGAGTTGTACAAGAAGAAGCATGAGGAGAAAGAGAAAGAAAGAATGGAGAGAGAGGCGGTTATTAGGGCAAAGAAGGAAGAGATAGAAAAAGCTGAAGCTCGGAGAAAGGCTATGCGTGAGAAAATGTTTAAGAAGACAAGAAAAGGGCAGCCTGTTATGAAATACAGAATAGAACATCTTTTGGAGACAATTCAAGGTTCATCTACAACCTCAGCAAACAAGAAATCTTGA 1782 0.4276 MSGSPNPNPKHQDAEAPQLHRTCDNCGDSTPLLYCKADSAKLCFSCDRVVHSTNQLFSKHTRSQLCDACGDAPATILCCDENSVLCQNCDWESHDNNLSVHQRRPLEGFSGCPSVTQLLTIVGLSEKTLLSNEGSSEIEEGLSDLVVWESRSVFGLDDLIASTDSSHNYHAMPVPPLHKKHKAACGRQKEEIVKQLRELAKSEPGLIYGNADAEQHMQSGNLSTGYERDIEAHIFPSYGAETGVFWWQRESSDPANQVVPSDTSLRTYGDQVPPNDRIVSGNHANGNNEGKPSNSFNAETLSITPKATPYELTSQERDSALLRYKEKKKTRRYDKHIRYESRKVRAESRIRIKGTYDLGWNWIVDNVTQICSCYAAAGFTIVRCPLQSPIPVLNSTVCREAMKKNEELREHFNKEKKKKITMKKNMARLGGNGLSLDAFANAKSKNNHYNPSIIKKQREFYKNAKNVNRFKKMLKQQNPGNHQCSAQDLIENEDETKEDKDMGDKRKKKKHSAFSLEELYKKKHEEKEKERMEREAVIRAKKEEIEKAEARRKAMREKMFKKTRKGQPVMKYRIEHLLETIQGSSTTSANKKS. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06784 593 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 354 - -
Seca8g06784 593 Coils Coil 531 565 - -
Seca8g06784 593 Pfam rRNA processing 453 582 IPR013730 -
Seca8g06784 593 ProSiteProfiles Zinc finger B-box type profile. 61 106 IPR000315 GO:0008270
Seca8g06784 593 SMART bboxneu5 66 106 IPR000315 GO:0008270
Seca8g06784 593 SMART bboxneu5 18 65 IPR000315 GO:0008270
Seca8g06784 593 Coils Coil 398 418 - -
Seca8g06784 593 CDD Bbox1_BBX-like 23 65 - -
Seca8g06784 593 MobiDBLite consensus disorder prediction 477 535 - -
Seca8g06784 593 Pfam CCT motif 317 355 IPR010402 GO:0005515
Seca8g06784 593 MobiDBLite consensus disorder prediction 488 535 - -
Seca8g06784 593 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Seca8g06784 593 CDD Bbox1_BBX-like 65 106 - -
Seca8g06784 593 ProSiteProfiles CCT domain profile. 317 359 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06784 Seca-Chr8 162768288 162774836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06784 15 332 C2C2-CO-like Transcription Factor Family AT2G47890 40.557 9.00e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca8g06784 rRNA_processing 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06784 - - gmx:100798117 456.832