Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06773 ATGTCAAATGTTTCAGGTGATGAAGTTAGTTTCTCCTCAGCAAACACTGTGGAAGAAGTTCATCAAGAAAAGGAGCAGCAACAACCACAAAATCACCCTCATGGCTCAAGTTCAGGACCTTCTGGTGCTTCCAACAGCAATAGCTCCTCTAATCAACAACAACAAGAAGCAACCAAGAAGAAAAGAAGTCTACCTGGAACCCCAGATCCAAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTCTGTGAGATCTGCAATAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGGAGAGGTCACAATCTTCCATGGAAACTGAGGCAGAGAACAACCAATGAGGTGAAGAAAAGGGTGTATGTGTGTCCTGAGCCATCATGCGTTCACCATAACCCTGCTCGTGCATTAGGAGACCTCACTGGCATTAAAAAACATTACAGCAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAATGCTCTAAAAAATATGCAGTCCAATCTGATTGGAAGGCTCACCAGAAAACATGTGGTACCAAAGAATACAAATGTGATTGCGGAACCATATTTTCCAGGAGAGATAGTTTTATCACTCATAGAGCATTTTGTGACGCATTAACTGAAGAAAACAACAGAGTGAACCAGGGATTAACAAGTGGCATGACATCAAACATGCAAAATGAAGTGCAGGATCCTATGGCTACAATGCCACTAAGCACTAGTTCCAACACTGTATCTGAATTCAACAACTACGATCCTAAGAACCCTCTTAAAACCCTCTCCCAAGAACTTCTCCCAATGCCATTCAAGTCCATGAGTATGGTTGGGGGAAGCATGTTCTCCACTTCATCAGGTACACTTTTTGGTGGTCCAAGAAGCTTATCTCCCTCTTCTTCCAGCCTTCAACTCAGTTCCAACAACAACAACAACTCCCCTGGTTTCAATTACTTCCAAGACAACAAAAATGGAGGCCTAATTTCTGGCTCAGTTCAAATGTCTGCAACAGCTTTATTACAGGTAGCAGCTCAAATGGGTGCCACTGCAAGCAATAGCATGAACTCTCCCATGATGCAAAAAAGCTTTGTTTGTGGCATGGTGGGTCCTGACACTGTCTCTTCTCCTAGAACAACATATTCTGGTGCTATCCAGCAGCATAACTCTTCCTTTGACCATTTCCATCCACACCCTGATCACATGGCTGGGGTTAGTGGTTGTGGAGCATTCACCAACCAATTTTTTCAGAGAGGGCAACAAGAAATGTCATTAATATTTGATTTTAACACAACTGGGTCAACAATGAGTGATATGGGAACGTTCAGCCCAATGTTCATGGGAAGTGACCACAACCCTGGCTTGATGAAGAATGTGGAACAAGAAGTAGCAGACGGAAACCCAATGGGGACATCAAGGTTTGGAGGTAGTGACACTGACATGACCACAGTTCATGATTTTTTGGGTGTTGGAGGTTCAACTTCAAGAGAAACGAGTTTGCATGAACCACAAAAACAACAGCAGCAAAGGTCGGAGTTTGAAGCATCTCACCAGAGGTTGCCAAACTTCCACCACCACCTTCAGTTATGGAGAAACCAATTCGAGACATTTGAGAGCTGCCACAGACCATGA 1650 0.4327 MSNVSGDEVSFSSANTVEEVHQEKEQQQPQNHPHGSSSGPSGASNSNSSSNQQQQEATKKKRSLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTKEYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMTSNMQNEVQDPMATMPLSTSSNTVSEFNNYDPKNPLKTLSQELLPMPFKSMSMVGGSMFSTSSGTLFGGPRSLSPSSSSLQLSSNNNNNSPGFNYFQDNKNGGLISGSVQMSATALLQVAAQMGATASNSMNSPMMQKSFVCGMVGPDTVSSPRTTYSGAIQQHNSSFDHFHPHPDHMAGVSGCGAFTNQFFQRGQQEMSLIFDFNTTGSTMSDMGTFSPMFMGSDHNPGLMKNVEQEVADGNPMGTSRFGGSDTDMTTVHDFLGVGGSTSRETSLHEPQKQQQQRSEFEASHQRLPNFHHHLQLWRNQFETFESCHRP. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06773 549 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 517 IPR031140 -
Seca8g06773 549 MobiDBLite consensus disorder prediction 1 17 - -
Seca8g06773 549 Pfam Zinc finger, C2H2 type 88 110 IPR013087 -
Seca8g06773 549 Gene3D Classic Zinc Finger 143 222 - -
Seca8g06773 549 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Seca8g06773 549 MobiDBLite consensus disorder prediction 1 73 - -
Seca8g06773 549 SMART c2h2final6 164 184 IPR013087 -
Seca8g06773 549 SMART c2h2final6 129 159 IPR013087 -
Seca8g06773 549 SMART c2h2final6 88 110 IPR013087 -
Seca8g06773 549 MobiDBLite consensus disorder prediction 297 316 - -
Seca8g06773 549 FunFam protein indeterminate-domain 12-like 67 135 - -
Seca8g06773 549 MobiDBLite consensus disorder prediction 29 61 - -
Seca8g06773 549 SUPERFAMILY beta-beta-alpha zinc fingers 87 185 IPR036236 -
Seca8g06773 549 MobiDBLite consensus disorder prediction 494 521 - -
Seca8g06773 549 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Seca8g06773 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Seca8g06773 549 Gene3D Classic Zinc Finger 66 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06773 Seca-Chr8 162572506 162575320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06773 59 358 IDZ Gene Family AT3G50700 56.075 1.72e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g06773 zf-C2H2 0.0056 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06773 - - gmx:100782774 689.493