LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g06761	ATGGTTGAAACCAGACGAGGCTCTTCTACTTCCAAGCGAGCTCTCTCTTCGCCTTCTCCTCCTAACACCAAACGATCCAAGCTCTCCGAGGATGCCTCATCCACAAACCTGCCCTCCGCGGGAATTAGTGCTCCGGTCAACGAATCTGGTGAACCGGAGCTACGGCCCCCTGATCTGCCAGATACGGCGTCGTTGAAGGCTGTGGATATTTGTGATGCAGACAAGTCTGCTTCTGTGCTTGTTAAAGCCGAGGCTTTGGTGTCCCCTCAGTGTCTAGGTGAAACTGCGGAGAAGTCTAAGGTGGCTGGTACGGGGTCAGCGCCTGGTCGGTCGAAGAAACGCCCCACGAAATCGAGCCCCAAGGCTGCATGGGGGAAGCTCCTCTCTCAGTATTCCCAGAATCCTCACTTGTCCATGAGTGATCCTATCATTACTGTTGGTCAAGGTCGTCAGTGTAATTTGCCTCTTAAAGATCCCACTGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCGTGGAGGTTCTTCAGTTGCCTTACTAGAAATTACAGGGGGTAAAGGTTCCGTTCAAGTTAATGGCAAGACCTACCGAAGGAATGCCCGTTTGATTTTAAGTGGAGGTGATGAGGTGGTCTTTGGTTCTTCTGGCAAACATGCTTATATCTTTCAGCAGCTCAAAAATAATAATATAACTACTTCCGGTGTACCTTCTGTGAGTATTTTAGAAGCCCAAAGTGCTCCAATAAATGGAATGCAAGTTGAAGCTAGATCTGGAGACCCTTCAGCTGTAGCTGGAGCATCAATATTGGCCTCTTTATCTAATCTTCATAAAGATCTATCTCTCCTTCCACCTCCTGCTAAAACTTGCAAGAATGTGCAACAAAATGCTGATATTTCATCACTCCCTTCTGGCCATGGTGATGATGTTCCAGACAATGAAATGAAGGATGGCACCAATAATGGTGAACCTGATGGAGCCTTTTCTGCGGAGAAAACTGTTCTTGCATCCTCTACCACTGTTAATGAAAATCCTAGCCTTGATACCATGGAAGTCGATGCCAATGTGGATGCAGATGTTGGGAAGATGACTGCTGCTACCTGCAAATTGAGGCCATTACTGCGCATGCTTGCTGGTTCATGTCCTGAATTTGATTTAAGTGGTAGCATTTCCAAGATATTGGAAGAGCGAAGGGAATTAAGAGAACTCCTTAAAGATGTTGATACCCCAACAATATTGGCATCGACCAGGCGACAAGCATTCAAGGAAAGTTTACAACAGAGAATTCTCAGTGCTGAGAATATTGATGTCTCATTTGAAAATTTCCCGTATTACCTAAGTGATACGACAAAGAATGTTTTGATTGCATCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGACCTCCCGTCAGTGTCTCCACGGATATTGTTATCTGGTCCTGCAGGTTCGGATATATATCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCCAGGCTATTAATTGTGGATTCTCTTTCTCTGCCTGGTGGAACACCATTGAAGGAAATTGATTCTCCTAAAGAAAGTTCAAGGTCTGAAAAGCCAGCTGTGCTGGGTAAGAGAAGTGCCCAGGCTGCTCCATTACATCATAAGAGGCCTGCTTCTAGTGTTGATGCTGAAATTATAGGTGGGTCTACATTAAGTTCTCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCACTACTCTTAAAACAGGTGATCGAGTAAAATTTGTTGGTAGCTTTCCAACTCACGTCTCATCACTACCGAATAATCCAAGGGGACCAAGCTATGGTTGTCGGGGCAAAGTTCTCCTTGCTTTTGAAGATAATGGGTCTTCAAAAATTGGGGTTAGATTTGATAAATCGATTCCAGATGGCAATGACCTTGGAGGCCTTTGTGAAGATGATCGTGGCTTCTTTTGTTCTGCAAATAGTTTACTACGGGTAGATGGTTCTGGAGGGGATGACCTTGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGCCTCTAATCAAAGCAAAAGCGATGCACTAGTGTTGTTCATTAAAGATATAGAGAAGGCAATGGTTGGGAACTCAGAAGTCTTGAAAAGTAAATTTGAAAGCTTGCCCCAGAATGTTGTGGTAATTGGCTCTCATACCCAGCTGGACAGTCGTAAGGAGAAGACCCAACCTGGCGGTCTTCTGTTTACAAAGTTTGGGAGCAATCAGACAGCACTACTTGATCTTGCTTTCCCGGATAACTTTAGTAGACTACATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAGCTTAGTCGCCTCTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGATGAGGCCTTACTTTCTGATTGGAAGCAACAGTTAGAACGTGACATTGAAACTATGAAAGCTCAGTCCAACATTGTCAACATTTGTTCAGTTCTCAACAAAATTGGATTGGATTGCCCTGACCTGGAGACTATTTGCATCAAAGATCAAACTCTAACTACTGAAAGTGTTGAGAAGATTATTGGCTGGGCTATAAGTTACCATTTTATGCATTCAACTGAAGCATCTACCAAAGAATCTAAGCTTGTGGTATCTGCAGAAAGCATTAAATATGGGTTTAGCATTCTACAGGGCATTCAAAATGAGAGCAAGAATTTGAAAAAGTCTTTGAAGGATGTAGTTACTGAGAATGAATTTGAGAAAAAATTGCTTGCTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTTATGCTTCCTCTTCAGAGGCCTGAATTGTTTTGCAAAGGACAACTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCTCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATATTTGCTGATGAGGGTGGTATTGTACTTACATAA	3141	0.4308	MVETRRGSSTSKRALSSPSPPNTKRSKLSEDASSTNLPSAGISAPVNESGEPELRPPDLPDTASLKAVDICDADKSASVLVKAEALVSPQCLGETAEKSKVAGTGSAPGRSKKRPTKSSPKAAWGKLLSQYSQNPHLSMSDPIITVGQGRQCNLPLKDPTVGNVLCKLSHIERGGSSVALLEITGGKGSVQVNGKTYRRNARLILSGGDEVVFGSSGKHAYIFQQLKNNNITTSGVPSVSILEAQSAPINGMQVEARSGDPSAVAGASILASLSNLHKDLSLLPPPAKTCKNVQQNADISSLPSGHGDDVPDNEMKDGTNNGEPDGAFSAEKTVLASSTTVNENPSLDTMEVDANVDADVGKMTAATCKLRPLLRMLAGSCPEFDLSGSISKILEERRELRELLKDVDTPTILASTRRQAFKESLQQRILSAENIDVSFENFPYYLSDTTKNVLIASTYIHLKCNGFGKYASDLPSVSPRILLSGPAGSDIYQETLSKALAKHFGARLLIVDSLSLPGGTPLKEIDSPKESSRSEKPAVLGKRSAQAAPLHHKRPASSVDAEIIGGSTLSSQAMLKQEVSTASSKGTTLKTGDRVKFVGSFPTHVSSLPNNPRGPSYGCRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANSLLRVDGSGGDDLDKVAINEIFEVASNQSKSDALVLFIKDIEKAMVGNSEVLKSKFESLPQNVVVIGSHTQLDSRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLSRLFPNKVTIQLPQDEALLSDWKQQLERDIETMKAQSNIVNICSVLNKIGLDCPDLETICIKDQTLTTESVEKIIGWAISYHFMHSTEASTKESKLVVSAESIKYGFSILQGIQNESKNLKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFADEGGIVLT.	1047

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g06761	1046	Gene3D	-	123	233	-	-
	Seca8g06761	1046	Gene3D	-	934	1040	IPR027417	-
	Seca8g06761	1046	SUPERFAMILY	SMAD/FHA domain	124	217	IPR008984	GO:0005515
	Seca8g06761	1046	Pfam	ATPase family associated with various cellular activities (AAA)	976	1040	IPR003959	GO:0005524\|GO:0016887
	Seca8g06761	1046	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	419	1040	-	-
	Seca8g06761	1046	MobiDBLite	consensus disorder prediction	521	559	-	-
	Seca8g06761	1046	Coils	Coil	896	916	-	-
	Seca8g06761	1046	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	935	1040	IPR027417	-
	Seca8g06761	1046	MobiDBLite	consensus disorder prediction	1	43	-	-
	Seca8g06761	1046	MobiDBLite	consensus disorder prediction	298	327	-	-
	Seca8g06761	1046	MobiDBLite	consensus disorder prediction	95	123	-	-
	Seca8g06761	1046	MobiDBLite	consensus disorder prediction	1	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g06761	Seca-Chr8	162429918	162449801	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g06761	935	1040	Calmodulin-binding Proteins	AT3G56690	45.283	1.85e-20	95.9